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Proteins/Genes ids supported



Babelomics database was implemented into Network Miner, therefore the most standard identifiers are accepted.

Homo Sapiens (Hsa)



  • CCDS ID
  • Codelink Identifier
  • EMBL (Genbank)
  • Ensembl gene
  • Ensembl Human
  • Ensembl protein
  • Ensembl transcript
  • EntrezGene ID
  • HAVANA transcript
  • HGNC automatic
  • HGNC curated
  • HGNC ID
  • HGNC symbol
  • IMGT Gene
  • IMGT/LIGM-DB Identifier
  • IPI ID
  • MEROPS ID
  • MIM Gene
  • PDB ID
  • RefSeq DNA
  • RefSeq Genomic
  • RefSeq Predicted
  • RefSeq Protein
  • Unigene ID
  • UniProt/SwissProt Accession
  • UniProt/SwissProt ID
  • UniProt/TrEMBL Accession
  • VEGA transcript
  • WikiGene name


Saccharomyces Cerevisiae (Sce)



  • EMBL (Genbank)
  • Ensembl gene
  • Ensembl protein
  • Ensembl transcript
  • EntrezGene ID
  • PDB ID
  • RefSeq Protein
  • SGD ID
  • UniProt/SwissProt Accession
  • UniProt/SwissProt ID
  • UniProt/TrEMBL Accession
  • UniProt Varsplice


Escherichia Coli K12 (Eco)



  • Ensembl gene
  • UniProt/SwissProt Accession


Mus Musculus (Mmu)



  • CCDS ID
  • Codelink Identifier
  • EMBL (Genbank)
  • Ensembl gene
  • Ensembl protein
  • Ensembl transcript
  • EntrezGene ID
  • Fantom ID
  • HAVANA transcript
  • IMGT Gene
  • IMGT/LIGM-DB Identifier
  • IPI ID
  • MGI Automatic
  • MGI Curated
  • MGI Description
  • MGI ID
  • MGI symbol
  • PDB ID
  • RefSeq DNA
  • RefSeq Predicted
  • RefSeq Protein
  • UCSC ID
  • Unigene ID
  • UniProt/SwissProt Accession
  • UniProt/SwissProt ID
  • UniProt/TrEMBL Accession
  • UniProt Varsplice
  • VEGA transcript
  • WikiGene name


Drosophila Melanogaster (Dme)



  • Berkley Drosophila
  • EMBL (Genbank)
  • EMBL predicted
  • Ensembl gene
  • Ensembl protein
  • Ensembl transcript
  • EntrezGene ID
  • FlyBase annotation
  • FlyBase cgid
  • FlyBase gene
  • FlyBaseName gene
  • FlyBaseName protein
  • FlyBaseName transcript
  • FlyBase protein
  • FlyBase transcript
  • FlyGrid Identifier
  • IDrosophila melanogaster
  • MEROPS ID
  • PDB ID
  • RefSeq DNA
  • RefSeq Protein
  • UniProt/SwissProt Accession
  • UniProt/SwissProt ID
  • UniProt/TrEMBL Accession
  • UniProt/TrEMBL predicted


Arabidopsis Thaliana (Ath)



  • Ensembl gene
  • Ensembl protein
  • Ensembl transcript
  • EntrezGene ID
  • IPI ID
  • PlantGDB PUT
  • PO Identifier
  • RefSeq DNA
  • RefSeq Protein
  • TAIR Identifier
  • TAIR Locus
  • Unigene ID
  • UniProtKB Varsplice
  • UniProt/SwissProt Accession
  • UniProt/TrEMBL Accession
  • WikiGene name


protein_gene_ids_supported.txt ยท Last modified: 2011/12/16 15:59 by lgarcia
Trace: protein_gene_ids_supported
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