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viewer [2012/10/16 16:07] lgarcia [2. Toolbar] |
viewer [2012/10/16 16:11] (current) lgarcia [Example] |
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| - | If you are interested in filter your nodes by any attribute such as a GO term, chromosome, etc, then you can create a filter in the **Network** > **Filters** > **Create** option. In the example, a filter based on the keyword //learning// is defined. Press save to be sure your filter will be stored up for future use. | + | If you want to check all information relative to a node, use **Network** > **Node Info**. A box will show you information like the genomic region of the node (Chromosome Name, Gene Start (bp), Gene End (bp)), its functional annotation (GO, Kegg, Reactome), the protein domains (Interpro) and its regulatory elements (TFs). |
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| + | {{:VIEWER-network-nodeIfno.png?|}} | ||
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| + | To screen your network by searching for any keyword, use **Network** > **Search** option. The keyword will be used to screen all term names and term descriptions in databases such as GO, Kegg, Reactome, Interpro, Jaspar and Ensembl. | ||
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| + | {{:VIEWER-network-search.png?|}} | ||
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| + | Finally, if you are interested in filter your nodes by any attribute such as a GO term, chromosome, etc, then you can create a filter in the **Network** > **Filters** > **Create** option. In the example, a filter based on the keyword //learning// is defined. Press save to be sure your filter will be stored up for future use. | ||
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| {{:VIEWER-network-filters.png?|}} | {{:VIEWER-network-filters.png?|}} | ||
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| - | Moreover, to screen your network by searching for any keyword, use **Network** > **Search** option. The keyword will be used to screen all term names and term descriptions in databases such as GO, Kegg, Reactome, Interpro, Jaspar and Ensembl. | ||
| - | \\ | ||
| - | {{:VIEWER-network-search.png?|}} | ||
| - | \\ | ||
| - | Finally, if you want to check all information relative to a node, use **Network** > **Node Info**. A box will show you information like the genomic region of the node (Chromosome Name, Gene Start (bp), Gene End (bp)), its functional annotation (GO, Kegg, Reactome), the protein domains (Interpro) and its regulatory elements (TFs). | ||
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| - | {{:VIEWER-network-nodeIfno.png?|}} | ||