Code, results and supplementary material of the manuscript "Integrated transcriptomic landscape of the effects of anti-steatotic treatments in mouse models of fatty liver disease" has been deposited on Zenodo and can be accessed through the following link. All data sets analyzed in the current study are available from Gene Expression Omnibus. All data generated during this study are shown here or as Supplementary Material.

The content of the files in Zenodo is detailed below:

• 00_R_package_versions.xlsx: Version of R and of the packages used in the analyses.
• Results of the 3 differential gene expression (DGE) comparisons. Each sheet corresponds to the results of one of the individual studies analyzed.
• 01-DGE_HFD-vs-ND.xlsx
• 01-DGE_HFDt-vs-HFD.xlsx
• 01-DGE_HFDt-vs-ND.xlsx
• 02_DGE_Meta-analyses_results.xlsx: Results of the 3 DGE meta-analyses performed (one per comparison). The results of each meta-analysis are in a different tab.
• Results of the 3 differential gene expression (GSA) comparisons. Each sheet corresponds to the results of one of the individual studies analyzed.
• 03-DGE_HFD-vs-ND.xlsx
• 03-DGE_HFDt-vs-HFD.xlsx
• 03-DGE_HFDt-vs-ND.xlsx
• 04_GSA_Meta-analyses_results.xlsx: Results of the 3 GSA meta-analyses performed (one per comparison). The results of each meta-analysis are in a different tab.

The first tab of each file contains an explanation of the abbreviations.