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Table of Contents
A.2.1. Sequence processing
A.2.1.1. Description by run
This table shows number of giga base pairs and descriptive indicators by run.
- run: this experiment included 4 runs
- total_Gb: total Gb (giga base pairs = 1000000000 bp) by run
- total_bb: total bp (base pairs) by run
- n_samples: number of samples by run
- mean_bp, median_bp, min_bp, max_pb: mean, median, minimum and maximum of base pairs by run
| run | total_Gb | total_bp | n_samples | mean_bp | median_bp | min_bp | max_bp |
|---|---|---|---|---|---|---|---|
| 1* | 4.77 | 4770585530 | 11 | 433689594 | 445836190 | 342733990 | 527195001 |
| 2 | 3.95 | 3948219783 | 10 | 394821978 | 391252349 | 323899889 | 459296799 |
| 3 | 4.54 | 4538693228 | 11 | 412608475 | 407515016 | 322055020 | 524150768 |
| 4 | 4.70 | 4696620129 | 11 | 426965466 | 429037538 | 339445518 | 504562600 |
* run 1 includes all 11 controls: patients with known mutations
A.2.1.2. Description by sample
This second table specifies number or reads and base pairs by sample.
- run: this experiment included 4 runs
- n_reads_pair1: number or reads in pair1 for each sample (analogous for n_reads_pair2)
- total_reads: sum of reads in pair1 and pair2 for each sample
- n_bp_pair1: number or base pairs (bp) for each sample (analogous for n_bp_pair2)
- total_bp: sum of bp in pair1 and pair2 for each sample
| run | sampleID | n_reads_pair1 | n_reads_pair2 | total_reads | n_bp_pair1 | n_bp_pair2 | total_bp |
|---|---|---|---|---|---|---|---|
| 1 | DNA_121 | 1493017 | 1493017 | 2986034 | 199321434 | 199320871 | 398642305 |
| 1 | DNA-223 | 1759170 | 1759170 | 3518340 | 236908830 | 236901200 | 473810030 |
| 1 | DNA_554 | 2014730 | 2014730 | 4029460 | 263591359 | 263603642 | 527195001 |
| 1 | DNA_571 | 1752830 | 1752830 | 3505660 | 231104848 | 231214063 | 462318911 |
| 1 | DNA-621 | 1664302 | 1664302 | 3328604 | 226391373 | 226438406 | 452829779 |
| 1 | DNA_837 | 1808034 | 1808034 | 3616068 | 232843484 | 232977851 | 465821335 |
| 1 | DNA_872 | 1594658 | 1594658 | 3189316 | 212938129 | 213006142 | 425944271 |
| 1 | DNA_708 | 1449876 | 1449876 | 2899752 | 188759028 | 188806098 | 377565126 |
| 1 | SGT-036 | 1522425 | 1522425 | 3044850 | 198918839 | 198969753 | 397888592 |
| 1 | SGT-044 | 1689150 | 1689150 | 3378300 | 222943295 | 222892895 | 445836190 |
| 1 | SGT-047 | 1299948 | 1299948 | 2599896 | 171337177 | 171396813 | 342733990 |
| 2 | 1091 | 1437433 | 1437433 | 2874866 | 183956869 | 184082767 | 368039636 |
| 2 | 1138 | 1242126 | 1242126 | 2484252 | 161975922 | 161923967 | 323899889 |
| 2 | 1179 | 1805889 | 1805889 | 3611778 | 229626906 | 229669893 | 459296799 |
| 2 | SGT-006 | 1524895 | 1524895 | 3049790 | 195988147 | 196319258 | 392307405 |
| 2 | SGT-018 | 1710694 | 1710694 | 3421388 | 222329550 | 222395540 | 444725090 |
| 2 | SGT-027 | 1448062 | 1448062 | 2896124 | 186240276 | 186202571 | 372442847 |
| 2 | SGT-031 | 1402556 | 1402556 | 2805112 | 180475901 | 180534171 | 361010072 |
| 2 | SGT-034 | 1543331 | 1543331 | 3086662 | 203049396 | 203049587 | 406098983 |
| 2 | SGT-037 | 1675711 | 1675711 | 3351422 | 215122680 | 215079089 | 430201769 |
| 2 | SGT-093 | 1533983 | 1533983 | 3067966 | 195030612 | 195166681 | 390197293 |
| 3 | 1133 | 1813498 | 1813498 | 3626996 | 234752599 | 234762887 | 469515486 |
| 3 | 1175 | 1441528 | 1441528 | 2883056 | 194178955 | 194218142 | 388397097 |
| 3 | SGT-002 | 1960140 | 1960140 | 3920280 | 262018086 | 262132682 | 524150768 |
| 3 | SGT-019 | 1494668 | 1494668 | 2989336 | 189501674 | 189535975 | 379037649 |
| 3 | SGT-023 | 1576985 | 1576985 | 3153970 | 209477997 | 209533941 | 419011938 |
| 3 | SGT-029 | 1571134 | 1571134 | 3142268 | 203746126 | 203768890 | 407515016 |
| 3 | SGT-030 | 1386573 | 1386573 | 2773146 | 184627286 | 184670139 | 369297425 |
| 3 | SGT-056 | 1205883 | 1205883 | 2411766 | 162093531 | 162158018 | 324251549 |
| 3 | SGT-068 | 1670524 | 1670524 | 3341048 | 226780867 | 226901758 | 453682625 |
| 3 | SGT-072 | 1797376 | 1797376 | 3594752 | 240820271 | 240958384 | 481778655 |
| 3 | SGT-081 | 1204387 | 1204387 | 2408774 | 161006365 | 161048655 | 322055020 |
| 4 | DNA_1101 | 1456643 | 1456643 | 2913286 | 194701190 | 194723164 | 389424354 |
| 4 | SGT-105 | 1786466 | 1786466 | 3572932 | 234421527 | 234753888 | 469175415 |
| 4 | SGT-106 | 1446125 | 1446125 | 2892250 | 189373618 | 189353874 | 378727492 |
| 4 | SGT-109 | 1908159 | 1908159 | 3816318 | 252235939 | 252326661 | 504562600 |
| 4 | SGT-111 | 1728680 | 1728680 | 3457360 | 231611300 | 231795796 | 463407096 |
| 4 | SGT-113 | 1759523 | 1759523 | 3519046 | 228388167 | 228851740 | 457239907 |
| 4 | SGT-114 | 1560086 | 1560086 | 3120172 | 202607224 | 202630860 | 405238084 |
| 4 | SGT-139 | 1572736 | 1572736 | 3145472 | 203159019 | 203286567 | 406445586 |
| 4 | SGT-142 | 1292855 | 1292855 | 2585710 | 169653473 | 169792045 | 339445518 |
| 4 | SGT-169 | 1647366 | 1647366 | 3294732 | 214432479 | 214605059 | 429037538 |
| 4 | SGT-170 | 1712205 | 1712205 | 3424410 | 226914061 | 227002478 | 453916539 |
