UBB

• heatmapper. Proporciona estupendos heatmaps directos a la publicación o el informe ;)
• boxplotr. A web-tool for generation of box plots
• Pathview. Visualization of differential expression analysis of RNA-seq data on top of KEGG pathway diagrams.
• ScatterPlot|
• Datawrapper. Charts, maps, and tables.

2.1. En el contexto de rutas de señalización o rutas metabólicas:

• hiPathia. Web tool for the interpretation of the consequences of the changes of gene expression levels in the context of signalling pathways.
• Metabolizer. Web tool for analysis of modular architecture of metabolic pathways using transcriptomic data.

2.2. Splicing alternativo:

• Alternative Splice Site Predictor (ASSP). ASSP predicts putative alternative exon isoform, cryptic, and constitutive splice sites of internal (coding) exons. Skipped splice sites are not differentiated from constitutive sites. Non-canonical splice sites are not detected. Alternative splicing is predicted based on the DNA/RNA sequence information only.

2.3. Visualización y análisis completo de datos de expresión, directamente seleccionados del repositorio públicos Gene Expression Omnibus:

• eVITTA. Visualización, expresión diferencial y caracterización de datos de expresión

2.4. Deconvoluting expression data to measure cell populations:

• CIBERSORTX. CIBERSORTx is an analytical tool to impute gene expression profiles and provide an estimation of the abundances of member cell types in a mixed cell population, using gene expression data.
• BATLAS. The BATLAS webtool uses a deconvolution algorithm to estimate the percentage of brown adipocytes in human or mouse tissue using RNA-seq data (Perdikari et al , 2018, Cell Reports).
• GEDIT. Gene Expression Deconvolution Interactive Tool (GEDIT)

2.5. Análisis de datos transcriptómicos de célula única:

• ASAP. A collaborative portal to analyze single-cell transcriptomics data
• Atlas scRNA-seq Parkinson's Disease
• Atlas scRNA-seq Multiple Sclerosis
• Atlas scRNA-seq Alzheimer's Disease

• Magia. MiRNA And Genes Integrated Analysis web tool
• Paintomics. Integra y visualiza diferentes resultados de ómicas

• DIANA tools
• https://pathmir.imib.es

• SYNGO