2.1. En el contexto de rutas de señalización o rutas metabólicas:
hiPathia. Web tool for the interpretation of the consequences of the changes of gene expression levels in the context of signalling pathways.
Metabolizer. Web tool for analysis of modular architecture of metabolic pathways using transcriptomic data.
2.2. Splicing alternativo:
Alternative Splice Site Predictor (ASSP). ASSP predicts putative alternative exon isoform, cryptic, and constitutive splice sites of internal (coding) exons. Skipped splice sites are not differentiated from constitutive sites. Non-canonical splice sites are not detected. Alternative splicing is predicted based on the DNA/RNA sequence information only.
2.3. Visualización y análisis completo de datos de expresión, directamente seleccionados del repositorio públicos Gene Expression Omnibus:
eVITTA. Visualización, expresión diferencial y caracterización de datos de expresión
2.4. Deconvoluting expression data to measure cell populations:
CIBERSORTX. CIBERSORTx is an analytical tool to impute gene expression profiles and provide an estimation of the abundances of member cell types in a mixed cell population, using gene expression data.
BATLAS. The BATLAS webtool uses a deconvolution algorithm to estimate the percentage of brown adipocytes in human or mouse tissue using RNA-seq data (Perdikari et al , 2018, Cell Reports).
GEDIT. Gene Expression Deconvolution Interactive Tool (GEDIT)
2.5. Análisis de datos transcriptómicos de célula única:
ASAP. A collaborative portal to analyze single-cell transcriptomics data
-
-
-