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references [2009/12/30 14:27]
aconesa
references [2014/05/12 12:06] (current)
jcarbonell
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 ===== References ===== ===== References =====
-[1] Conesa, A.; Nueda, M.J.; Ferrer, A. and Talón, M. (2006) maSigPro: a Method to Identify Significantly Differential Expression Profiles in Time-Course Microarray Experiments. Bioinformatics,​ 22 (9), 1096-1102.\\ +[1] Conesa, A.; Nueda, M.J.; Ferrer, A. and Talón, M. (2006) ​{{:​bio1096-1102.pdf|maSigPro: a Method to Identify Significantly Differential Expression Profiles in Time-Course Microarray Experiments.}} Bioinformatics,​ 22 (9), 1096-1102.\\ 
-[2] Nueda, M.J.; Conesa, A.; Westerhuis, J.A.; Hoefsloot, H.C.J.; Smilde, A.K.; Talón, M. and Ferrer, A. (2007) Discovering gene expression patterns in Time Course Microarray Experiments by ANOVA-SCA. Bioinformatics,​ 23 (14), 1792-1800.\\+[2] Nueda, M.J.; Conesa, A.; Westerhuis, J.A.; Hoefsloot, H.C.J.; Smilde, A.K.; Talón, M. and Ferrer, A. (2007) ​{{:​bio1792-1800.pdf|Discovering gene expression patterns in Time Course Microarray Experiments by ANOVA-SCA.}} Bioinformatics,​ 23 (14), 1792-1800.\\
 [3] Smilde, A.K.; Jansen, J.J.; Hoefsloot, H.C.J.; Lamers, R.J.A.N.; Van der Greef, J. and Timmerman, M.E. (2005) ANOVA-Simultaneous component analysis (ASCA): a new tool for analyzing designed metabolomics data. Bioinformatics,​ 21 (13), 3043-3048.\\ [3] Smilde, A.K.; Jansen, J.J.; Hoefsloot, H.C.J.; Lamers, R.J.A.N.; Van der Greef, J. and Timmerman, M.E. (2005) ANOVA-Simultaneous component analysis (ASCA): a new tool for analyzing designed metabolomics data. Bioinformatics,​ 21 (13), 3043-3048.\\
-[4] Nueda, M.J.; Sebastián, P.; Tarazona, S.; García-García,​ F.; Dopazo, J.; Ferrer, A. and Conesa, A. (2009) Functional Assessment of Time Course Microarray data. BMC Bioinformatics,​ 10 (suppl 6): S9.\\+[4] Nueda, M.J.; Sebastián, P.; Tarazona, S.; García-García,​ F.; Dopazo, J.; Ferrer, A. and Conesa, A. (2009) ​{{:​functional_assessment_1471-2105-10-s6-s9.pdf|Functional Assessment of Time Course Microarray data.}} BMC Bioinformatics,​ 10 (suppl 6): S9.\\
 [5] Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, Mesirov JP. (2005) Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A, 25;​102(43):​15545-50.\\ [5] Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, Mesirov JP. (2005) Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A, 25;​102(43):​15545-50.\\
 [6] Al-Shahrour F, Arbiza L, Dopazo H, Huerta-Cepas J, Mínguez P, Montaner D, Dopazo J. (2007) From genes to functional classes in the study of biological systems. BMC Bioinformatics,​ 3;8:114.\\ [6] Al-Shahrour F, Arbiza L, Dopazo H, Huerta-Cepas J, Mínguez P, Montaner D, Dopazo J. (2007) From genes to functional classes in the study of biological systems. BMC Bioinformatics,​ 3;8:114.\\
 +[7] Tarazona S, Prado-López S, Dopazo J, Ferrer A, and Conesa A (2012). Variable selection for multifactorial genomic data. Chemometrics and Intelligent Laboratory Systems, 110:​113-122.​
references.1262179653.txt.gz · Last modified: 2009/12/30 14:27 by aconesa
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