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gettin [2010/05/05 15:33]
jcarbonell
gettin [2010/05/07 21:37] (current)
jcarbonell
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 You can see details of these steps animated: You can see details of these steps animated:
  
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- 
 ===== Quick Start with maSigPro ==== ===== Quick Start with maSigPro ====
  
-  - Once data is in your work space, go to the maSigPro tab and select ​you expression dataset and covariates. The covariates files is parsed and you are prompted to select quantitative factor, qualitative factor and control group (go to [[masigpro | maSigPro help]] for more details of the algorithm). ​+  - Once data is in your work space, go to the maSigPro tab and select ​your expression dataset and covariates. The covariates files is parsed and you are prompted to select quantitative factor, qualitative factor and control group (go to [[masigpro | maSigPro help]] for more details of the algorithm). ​
   - Your job name appears at the Job list panel in red. Once it is completed, the name turns green.   - Your job name appears at the Job list panel in red. Once it is completed, the name turns green.
   - Click on the job name to go to the results page.   - Click on the job name to go to the results page.
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 You can also see this animated: You can also see this animated:
  
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 ===== Quick Start with ASCA-genes ==== ===== Quick Start with ASCA-genes ====
  
-  - Once data is in your work space, go to the ASCA-genes tab and select ​you expression dataset and covariates. You can run the program with the default parameters or change them. (Go to [[ASCAgenes | ASCA-genes help]] for more details of the algorithm).+  - Once data is in your work space, go to the ASCA-genes tab and select ​your expression dataset and covariates. You can run the program with the default parameters or change them. (Go to [[ASCAgenes | ASCA-genes help]] for more details of the algorithm).
   - Your job name appears at the Job list panel in red. Once it is completed, the name turns green.   - Your job name appears at the Job list panel in red. Once it is completed, the name turns green.
   - Click on the job name to go to the results page.   - Click on the job name to go to the results page.
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   - Finally, trajectory plots show the general trends identified by the ASCA submodels.   - Finally, trajectory plots show the general trends identified by the ASCA submodels.
  
-You can also see this animated ​(VIDEO 3).+You can also see this animated:
  
 +[[http://​bioinfo.cipf.es/​seawiki/​lib/​exe/​fetch.php?​media=videos:​asca_genes.html|{{ :​videos:​asca_genes_video_mini.png |}}]]
  
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 ===== Quick Start with ASCA-functional ==== ===== Quick Start with ASCA-functional ====
  
-  - Once data is in your work space, go to the ASCA-functional tab and select ​you expression dataset and covariates. You can run the program with the default parameters or change them. (Go to [[ascafunctional | ASCA-functional help]] for more details of the algorithm).+  - Once data is in your work space, go to the ASCA-functional tab and select ​your expression dataset and covariates. You can run the program with the default parameters or change them. (Go to [[ascafunctional | ASCA-functional help]] for more details of the algorithm).
   - You can choose here the organism of your study to obtain the annotations.   - You can choose here the organism of your study to obtain the annotations.
   - If the species you are working with is not in the SEA-database you can select the annotations previously uploaded.   - If the species you are working with is not in the SEA-database you can select the annotations previously uploaded.
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   - Secondly, trajectory plots show the general trends identified by the ASCA submodels.   - Secondly, trajectory plots show the general trends identified by the ASCA submodels.
   - A table for each principal component (PC) is showed with the Fatiscan results.   - A table for each principal component (PC) is showed with the Fatiscan results.
-  - In this tables Functional Categories can be sorted by the adjusted p-values.+  - In these tables Functional Categories can be sorted by the adjusted p-values.
   ​   ​
-You can also see this animated ​(VIDEO 4).+You can also see this animated
 + 
 + 
 +[[http://​bioinfo.cipf.es/​seawiki/​lib/​exe/​fetch.php?​media=videos:​asca_functional.html|{{ :​videos:​asca_functional_video_mini.png |}}]] 
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gettin.1273066436.txt.gz · Last modified: 2010/05/05 15:33 by jcarbonell
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