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formats [2010/05/04 23:21] aconesa |
formats [2010/05/04 23:41] aconesa |
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| * **Covariates**: txt file with experimental design information, containing as many columns as arrays and as many rows as experimental factors. Each cell contains the value of the array in the experimental factor: \\ | * **Covariates**: txt file with experimental design information, containing as many columns as arrays and as many rows as experimental factors. Each cell contains the value of the array in the experimental factor: \\ | ||
| \\ | \\ | ||
| - | |Time|3|3|3|9|9|9|27|27|27| | + | |Time|3|3|3|9|9|9|27|27|27|…| |
| - | |Treatment|Ctr|TrA|TrB|Ctr|TrA|TrB|Ctr|TrA|TrB| | + | |Treatment|Ctr|TrA|TrB|Ctr|TrA|TrB|Ctr|TrA|TrB|…| |
| \\ | \\ | ||
| - | Experimental factors must have always more than one level, i.e. two or more time-points, two or more treatments. If not, the experimental factor cannot be considered as such and should not be included in the covariates file. | + | Experimental factors must have always **more than one level**, i.e. two or more time-points, two or more treatments, etc. If not, the experimental factor cannot be considered as such and should not be included in the covariates file. |
| \\ | \\ | ||
| \\ | \\ | ||
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| |gene_3|GO:0087630| | |gene_3|GO:0087630| | ||
| |gene_3|GO:0008977| | |gene_3|GO:0008977| | ||
| + | |...|...| | ||
| + | \\ | ||
| + | For data file examples, go to the [[examples| Worked Examples]] Menu | ||
| \\ | \\ | ||
