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tutorial [2013/03/27 11:24] sotacam |
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| ====== NOISeq Tutorial ====== | ====== NOISeq Tutorial ====== | ||
| - | The NOISeq tutorial can be downloaded from Bioconductor website. Click [[http://www.bioconductor.org/packages/2.12/bioc/html/NOISeq.html|here]]. | + | The NOISeq tutorial can be downloaded from Bioconductor website. Click [[http://www.bioconductor.org/packages/release/bioc/html/NOISeq.html|here]]. |
| - | In NOISeq package, you can find not only the method to compute **differential expression** between two experimental conditions from RNA-seq data, but also other functions in order to learn more about saturation, contamination or other biases in your data as well as to explore the differential expression results. | + | In NOISeq package, you can find not only the methods NOISeq and NOISeqBIO to compute **differential expression** between two experimental conditions from RNA-seq data, but also other functions in order to learn more about saturation, contamination or other biases in your data as well as to explore the differential expression results. |
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| - | ====== NOISeqBIO Tutorial ====== | ||
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| - | Please, follow these instructions to run NOISeqBIO: | ||
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| - | - Install NOISeq Bioconductor package (see [[downloads|Downloads]]). | ||
| - | - Download the zip file containing the R scripts for NOISeqBIO (from [[downloads|Downloads]]). | ||
| - | - Unzip this file. | ||
| - | - To load the NOISeqBIO functions from the R console, please type: ''source("NOISeqBIO_v00/loadingFunctions.R")''. Remember you have to change the path if you are in another working directory. | ||
| - | - Follow this example of application of NOISeqBIO with your own data: | ||
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| - | > mydata = readData() # as it was down in NOISeq (please go to the Tutorial for more information) | ||
| - | > myresults = noiseqbio() | ||
| - | > mydeg = | ||
tutorial.1364379865.txt.gz ยท Last modified: 2013/03/27 11:24 by sotacam
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