User Tools


This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
downloads [2015/05/29 13:32]
sotacam [Simulation algorithm]
downloads [2015/06/03 15:19] (current)
Line 45: Line 45:
 ===== Simulation algorithm ===== ===== Simulation algorithm =====
 +R scripts for simulating RNA-seq count data for two experimental conditions:
 {{:​simulation_high.r|Simulation of HIGH variability scenarios}} {{:​simulation_high.r|Simulation of HIGH variability scenarios}}
 {{:​simulation_low.r|Simulation of LOW variability scenarios}} {{:​simulation_low.r|Simulation of LOW variability scenarios}}
 +===== Differential expression on simulated data =====
 +These scripts show how the differential expression methods were applied on simulated data sets:
 +{{:​methodsonsimulations.r|DE methods on simulations}}
 +{{:​globalsimulationsanalysis.r|Analysis of DE results}}
 +===== Analysis on experimental data =====
 +R script used for generating exploratory figures, differential expression and functional enrichment analysis on experimental datasets (F.oxysporum and Prostate Cancer):
 +{{:​resultsexperimentaldata.r|Experimental Data Analysis}}