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downloads [2015/05/29 13:31]
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downloads [2015/06/03 15:19] (current)
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 ===== Simulation algorithm ===== ===== Simulation algorithm =====
  
-{{:simulation_high.r|Simularion of high variability scenarios}}+R scripts for simulating RNA-seq count data for two experimental conditions:
  
 +{{:​simulation_high.r|Simulation of HIGH variability scenarios}}
  
 +{{:​simulation_low.r|Simulation of LOW variability scenarios}}
 +
 +
 +===== Differential expression on simulated data =====
 +
 +These scripts show how the differential expression methods were applied on simulated data sets:
 +
 +{{:​methodsonsimulations.r|DE methods on simulations}}
 +
 +{{:​globalsimulationsanalysis.r|Analysis of DE results}}
 +
 +
 +===== Analysis on experimental data =====
 +
 +R script used for generating exploratory figures, differential expression and functional enrichment analysis on experimental datasets (F.oxysporum and Prostate Cancer):
 +
 +{{:​resultsexperimentaldata.r|Experimental Data Analysis}}