{"id":712,"date":"2020-10-21T12:58:21","date_gmt":"2020-10-21T11:58:21","guid":{"rendered":"https:\/\/bioinfo.cipf.es\/ubb\/?page_id=712"},"modified":"2026-04-17T11:57:30","modified_gmt":"2026-04-17T10:57:30","slug":"publications","status":"publish","type":"page","link":"https:\/\/bioinfo.cipf.es\/cbl\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"

2026<\/strong><\/span><\/p>\n

    \n
  1. Monocarboxylate transporter 2 is required for the maintenance of myelin and axonal integrity by oligodendrocytes<\/span><\/a>. L Izagirre-Urizar, L Mora-Huerta, I Soler-Saez, R Morales-Gallel, MJ Ulloa-Navas, JC Chara, S Calovi, C Deboux, L Merino-Cacho, C Netzahualcoyotzi, M Domercq, JL Zugaza, L Pellerin, F Garcia-Garcia, JM Garcia-Verdugo, C Matute, B Nait-Oumesmar, V Tepavcevic*. Nature Communications<\/strong><\/em> 2026.<\/span><\/li>\n
  2. Transcriptomic meta-analysis identifies core molecular pathways in plaque psoriasis<\/a>. T Torres-Moral*, J Riera-Monroig*, G Tell-Marti, B G\u00f3mez-Caba\u00f1es, J Bague, JF Catal\u00e0-Senent, FJ Roig, M Potrony, F Garcia-Garcia*, SPuig. \u00a0Journal of the European Academy of Dermatology and Venereology<\/strong> <\/em>2026<\/span>.<\/span><\/li>\n
  3. Clinically Significant Prostate Cancer Detection with Deep Learning in a Multi-Center Magnetic Resonance Imaging Study. <\/a>J Alzate-Grisales, A Mora-Rubio, M Peran-Teruel, A Navarro Beltr\u00e1n, C Ruiz-Torres, JM Osca Garc\u00eda, F Garc\u00eda-Garc\u00eda, R Tabares-Soto, JM Garc\u00eda-G\u00f3mez,\u00a0 M de la Iglesia Vaya.\u00a0 Scientific Reports<\/em><\/strong>\u00a02026.\u00a0<\/span><\/li>\n
  4. Myc sustains Regional and Sex-biased Organ Zonation in the Drosophila Intestine<\/span>. C Amourda, L Blackie, P Gaspar, L Martin-Coll, AR Prasad, AH House, M Holopainen, H Ruhanen, N Lamichane, D Hadjieconomou, T Ameku, A Mineo, M Coxhead, I Soler-S\u00e1ez, C Galiana-Rosell\u00f3 , F Garc\u00eda-Garcia, YF Wang, C Alexandre, A Bailey, AP Gould, V Hietakangas, R K\u00e4kel\u00e4, S Vernia*, I Miguel-Aliaga*. Developmental Cell<\/strong><\/em> 2026.\u00a0<\/span><\/li>\n
  5. From diverse CT scans to generalization: towards robust abdominal organ segmentation<\/a>. N. \u00c1lvarez-Llopis, F. Ocampo Osorio, JA \u00c1lzate Grisales, A Mora Rubio, F Garc\u00eda-Garc\u00eda, M de la Iglesia-Vaya. \u00a0BMC Medical Imaging<\/em><\/strong>\u00a0 March 2026.\u00a0<\/span><\/li>\n
  6. Transposable elements as new players to decipher sex differences in Parkinson Disease<\/a>. F Gordillo-Gonzalez, C Galiana-Rosello, R Grillo-Risco, I Soler-Saez, MR Hidalgo, H Siomi, M Kobayashi-Ishihara*, F Garcia-Garcia*. \u00a0bioRxiv<\/strong> . doi<\/em>:<\/span> https:\/\/www.biorxiv.org\/content\/10.64898\/2026.03.27.714370v1<\/a><\/li>\n
  7. Integrative multi-cohort analysis reveals consistent sex differences in gut microbiota of multiple sclerosis patients.\u00a0 I Soler-S\u00e1ez, C Galiana-Rosell\u00f3, R Grillo-Risco, G Falony, V Tepav\u010devi\u0107, S Vieira-Silva, F Garc\u00eda-Garc\u00eda*. bioRxiv.<\/strong><\/em><\/span><\/li>\n
  8. Meta-analysis of the melanoma miRNome identifies consensus signatures of progression and prognosis regulating metabolic plasticity and stress resistance<\/a>. B Gomez-Caba\u00f1es, H G\u00f3mez-Mart\u00ednez,\u00a0 C Galiana-Rosell\u00f3, Z Andreu, A Lop\u00e9z-Cerdan, NM Eskow, JA Lopez-Guerrero, B Dolader-Rabinad, N del Rey D\u00edez, A Viru\u00e9s-Morales, MR Hidalgo, E Hernando*, F Garcia-Garcia*.\u00a0bioRxiv<\/em><\/strong> .\u00a0doi:\u00a0<\/em>https:\/\/doi.org\/10.1101\/2023.10.20.563284<\/a><\/span><\/li>\n
  9. Uncovering sex differences in Parkinson\u2019s Disease through metaanalysis of single cell transcriptomic studies<\/span>.<\/a> F Gordillo-Gonz\u00e1lez, I Soler-S\u00e1ez, C Galiana-Rosell\u00f3, MR Hidalgo, B G\u00f3mez-Caba\u00f1es, R Grillo-Risco, B Dolader-Rabinad, N del Rey D\u00edez, A Viru\u00e9s-Morales, N Yanguas-Cas\u00e1s, F Casanova Ferrer, P Palero-Renart, S Salvador-Guerrero, CI Garc\u00eda-Rodr\u00edguez, F Garc\u00eda-Garc\u00eda*. bioRxiv<\/strong> . doi:<\/em>\u00a0https:\/\/doi.org\/10.1101\/2024.12.20.628852<\/a><\/span><\/li>\n
  10. DisMed-LLM: De-identifying Spanish Medical Text with Large Language Models<\/span><\/a>. JA Alzate-Grisales, J Bernal-Salcedo, JM Saborit-Torres, A Mora-Rubio, J Montell Serrano, F Garc\u00eda-Garc\u00eda, M De La Iglesia-Vay\u00e1*.\u00a0TechRxiv<\/em><\/strong> . doi:\u00a0https:\/\/www.techrxiv.org\/doi\/full\/10.36227\/techrxiv.173750175.54269764\/v1<\/a><\/span><\/li>\n
  11. Single cell landscape of sex differences in the progression of multiple sclerosis<\/span><\/a>. I Soler-Saez, B Gomez-Caba\u00f1es, R Grillo-Risco, C Galiana-Rosello, B Dolader-Rabinad, N del Rey D\u00edez, A Viru\u00e9s-Morales, F Casanova-Ferrer, F Gordillo-Gonz\u00e1lez, N Yanguas-Cas\u00e1s, P Palero-Renart, S Salvador-Guerrero, CI Garc\u00eda-Rodr\u00edguez, L Barea-Moya, H Carceller, M de la Iglesia-Vaya, S Gil-Perotin, V Tepavcevic, MR Hidalgo*, F Garcia-Garcia*. 2026 (under review<\/em>).<\/strong><\/span><\/li>\n
  12. RBFOX2 Promotes Hepatocellular Carcinoma via Regulation of Cationic Amino Acid Transport<\/span>. S Yu, H Paterson, E Mancini, C Galiana-Rosell\u00f3, I Soler-S\u00e1ez, R Miquel, J Hernandez, J Fort, Z Hall, N Haberman, M Vacca, F Garcia-Garcia, M Palacin, L Fets, S Vernia*. 2026 (under review<\/em><\/strong>).<\/span><\/li>\n
  13. Multiomics integration reveals sex-based differences in circulating extracellular vesicle lipidome and miRNome of alcohol use disorder patients<\/span><\/span><\/a>.\u00a0<\/span>C Perpi\u00f1\u00e1-Cl\u00e9rigues, S Mellado, C Galiana-Rosell\u00f3, S Kodikara, B Mart\u00edn-Urdiales, M Marcos, KA L\u00ea Cao, F Garc\u00eda-Garc\u00eda* and M Pascual*. 2026 (under review<\/em><\/strong>).<\/span><\/li>\n
  14. Comparing Structural and Radiomic MRI Features for Classification of First-Episode psychosis.<\/span> JM Saborit-Torres, MJ Escart\u00ed, A Postiguillo Giraldos, M Penad\u00e9s Fons, JM Rubio, F Garc\u00eda Garc\u00eda, G Garcia Mart\u00ed, J Nacher, EJ Aguilar Garcia-Iturrospe, JV Manjon, JM Sempere-Luna, M de la Iglesia-Vay\u00e1*. 2026 (under review<\/em><\/strong>).<\/span><\/li>\n
  15. ANI-based species boundaries and functional divergence in the core proteome of human-associated Bifidobacteria<\/span>.\u00a0 A Vaquero-Rey, A Nahilo-G\u00f3mez, F Garc\u00eda-Garc\u00eda, A Ben\u00edtez-P\u00e1ez<\/span><\/span>*. 2026 (under review<\/em><\/strong>).<\/span><\/li>\n
  16. Exposure to Pharmaceutical Contaminants in Stranded Wild Dolphins of the Western Mediterranean.\u00a0 I Navas; M Felipo-Benavent; JL Crespo-Picazo; D Garc\u00eda-P\u00e1rraga; A Mart\u00ednez-Romero; F Garc\u00eda-Garc\u00eda; JE O\u2019Connor; C Rubio-Guerri; AJ Garc\u00eda-Fern\u00e1ndez. 2026 (under review<\/em><\/strong>).<\/span><\/li>\n
  17. MetaOmixTools: an interactive web suite for meta-analysis of ranked features and functional enrichment<\/a>.\u00a0 R Grillo-Risco, M Kupchyk Tiurin, C Perpi\u00f1\u00e1-Cl\u00e9rigues, FJ Cordero Felipe, S Lozano Ju\u00e1rez, M de la Iglesia-Vay\u00e1, F Garc\u00eda-Garc\u00eda.\u00a0 bioRxiv <\/em><\/strong>2026. doi: https:\/\/www.biorxiv.org\/content\/10.64898\/2026.02.24.707748v1\u00a0 (under review<\/em><\/strong>).<\/span><\/li>\n
  18. Multimodal Artificial Intelligence for Prostate Cancer Identification and Risk Stratification: A Review of Data Fusion, Model Design, Evaluation, and Clinical Translation. JA Alzate-Grisalesa*, F Ocampo Osorio, JD Restrepo Orozco, JD Rendon Tabares, M Per\u00e1n-Teruel, A Navarro Beltr\u00e1n, C Ruiz Torres, F Garc\u00eda-Garc\u00eda, R Tabares-Soto, JM Garc\u00eda-G\u00f3mez, M de la Iglesia-Vay\u00e1*. 2026 (under review<\/em><\/strong>).<\/span><\/li>\n
  19. Bone marrow deletion of Ptpn1 ameliorates biliary injury by shifting immune cell recruitment and enhancing proliferation of liver progenitor cells. S Calero-P\u00e9rez, E del Fresno Ventura, R Grillo-Grisco, \u00c1 Montes-San Lorenzo, F Garc\u00eda-Garc\u00eda, M Delibegovic, MP Valdecantos, AM Valverde. 2026 (under review<\/em><\/strong>).<\/span><\/li>\n
  20. Multi-Omics Factor Analysis v2 (MOFA+) reveals specific co-variation patterns in women with polycystic ovary syndrome (PCOS) that are strongly influenced by obesity. E G\u00e9raud, MA Mart\u00ednez-Garc\u00eda, M Insenser, S Barcel\u00f3-Cerd\u00e1, F Garc\u00eda-Garc\u00eda, M Luque-Ram\u00edrez, HF Escobar-Morrealeb*. 2026 (under review<\/em><\/strong>).<\/span>\n

    \u00a0<\/p>\n<\/li>\n<\/ol>\n


    2025<\/strong><\/span><\/p>\n

      \n
    1. Transcriptomic landscape of sex differences in obesity and type 2 diabetes in subcutaneous adipose tissue<\/span><\/a>.\u00a0RA Moldovan, MR Hidalgo, H Castane, A Jimenez-Franco, J Joven, DJ Burks, A Galan*, F Garcia-Garcia*.\u00a0Metabolism.\u00a0<\/em><\/strong>2025 Mar.\u00a0<\/em>PMID: 40157598. doi:\u00a0<\/strong>10.1016\/j.metabol.2025.156241<\/a><\/span><\/li>\n
    2. Revisiting gender differences in obesity and type 2 diabetes: Letter to the editor.<\/span><\/a> A Gal\u00e1n*, F Garcia-Garcia*. Metabolism<\/em><\/strong>.\u00a02025 May<\/em>. PMID: 40449616. doi:\u00a0https:\/\/doi.org\/10.1016\/j.metabol.2025.156307<\/a><\/span><\/li>\n
    3. A comprehensive transcriptional reference for severity and progression in spinal cord injury reveals novel translational biomarker genes<\/span><\/a>.\u00a0R Grillo-Risco, MR Hidalgo, B Mart\u00ednez Rojas, V Moreno-Manzano*, F Garc\u00eda-Garc\u00eda*<\/em>.\u00a0Journal of Translational Medicine<\/em><\/strong>\u00a02025<\/em>.<\/span><\/li>\n
    4. Unravelling the impact of TLR4 and sex on chronic alcohol consumption-induced lipidome dysregulation in extracellular vesicles<\/span><\/a>.\u00a0C Perpi\u00f1\u00e1-Clerigues, S Mellado, C Galiana-Rosello, F Garcia-Garcia*, M Pascual*.\u00a0Journal of Proteome Research<\/strong>\u00a02025 Jan<\/em>.<\/span><\/li>\n
    5. Sex differences in the neuroinflammatory signaling pathway: Effect of miRNAs on fatty acid synthesis in microglia<\/span><\/a>.\u00a0Z Haolin, A Mizokami*, S Romera-Giner, J Llera-Oyola, Y Yamawaki, T Sano, E Jimi, F Garc\u00eda-Garc\u00eda, T Kanematsu.\u00a0Biol Sex Differ\u00a0<\/strong>16, 9 (2025).\u00a0https:\/\/doi.org\/10.1186\/s13293-025-00686-8<\/a><\/em><\/span><\/li>\n
    6. Deciphering the Interplay Between G-Quadruplexes and Natural\/Synthetic Polyamines<\/span><\/a>.\u00a0Gil-Mart\u00ednez A, Galiana-Rosell\u00f3 C, L\u00e1zaro-G\u00f3mez A, Mulet-Rivero L, Gonz\u00e1lez-Garc\u00eda J.\u00a0Chembiochem<\/em><\/strong>\u00a02024 Dec 10:e202400873\u00a0doi:<\/em>\u00a010.1002\/cbic.202400873<\/a><\/span><\/li>\n
    7. The emerging role of mesenchymal stem cell\u2013derived extracellular vesicles to ameliorate hippocampal NLRP3 inflammation induced by binge-like ethanol treatment in adolescence<\/span><\/a>. S Mellado, MJ Morillo-Bargues, C Perpi\u00f1\u00e1-Cl\u00e9rigues, F Garc\u00eda-Garc\u00eda, V Moreno-Manzano, C Guerri, M Pascual*.\u00a0Neural Regeneration Research<\/strong>\u00a020(4):p 1153-1163, April 2025. doi:\u00a0<\/em>10.4103\/NRR.NRR-D-23-01397<\/a><\/span><\/li>\n
    8. Deciphering lipidomics landscape of urine extracellular vesicles in alcohol use disorder patients<\/span><\/a>.<\/span> B\u00a0Martin-Urdiales,\u00a0C\u00a0Perpina-Clerigues,\u00a0S\u00a0Mellado,\u00a0M\u00a0Rojas-Pirela,\u00a0ML\u00a0Aguilar Sanchez,\u00a0D\u00a0Puertas-Miranda,\u00a0F\u00a0Garcia-Garcia*,\u00a0M\u00a0Marcos*,\u00a0M\u00a0Pascual*. Journal of Proteome Research<\/strong>, Sep 2025.\u00a0<\/span><\/li>\n
    9. \n

      Role of miRNAs from mesenchymal stem cell-derived extracellular vesicles in neuroinflammation and behavioral impairments induced by chronic alcohol consumption in female mice<\/a><\/span>.\u00a0 Mellado S, Touahri N, Montagud-Romero S, Perpi\u00f1\u00e1-Cl\u00e9rigues C, Garc\u00eda-Garc\u00eda F, Moreno-Manzano V, Guerri C, Rodr\u00edguez-Arias M, Pascual M*. Neural Regen Res<\/strong>. 2025 Jun 19. doi: 10.4103\/NRR.NRR-D-24-01260. PMID: 40537146<\/span><\/p>\n<\/li>\n

    10. Unveiling common transcriptomic features between melanoma brain metastases and neurodegenerative diseases<\/span><\/a>.<\/span>\u00a0I Soler-S\u00e1ez, A Karz, MR Hidalgo, B G\u00f3mez-Caba\u00f1es, A L\u00f3pez-Cerd\u00e1n, JF Catal\u00e0-Senent, K Prutisto-Chang, NM Eskow, B Izar, T Redmer, S Kumar, MA Davies, M de la Iglesia-Vay\u00e1, E Hernando*<\/sup>, F Garc\u00eda-Garc\u00eda*<\/sup>.\u00a0Journal of Investigative Dermatology<\/strong> 2025 May<\/em>,\u00a0doi: 10.1016\/j.jid.2024.09.005<\/em><\/span><\/li>\n<\/ol>\n

      2024<\/span><\/strong><\/p>\n

        \n
      1. Integrated transcriptomic landscape of the effects of anti-steatotic treatments in mouse models of fatty liver disease<\/span><\/a>. I Fuster-Mart\u00ednez, JF Catal\u00e0-Senent, MR Hidalgo, FJ Roig, JV Esplugues, N Apostolova, F Garc\u00eda-Garc\u00eda*, A Blas-Garc\u00eda*.\u00a0Journal of Pathology<\/strong>\u00a02024 Jan. doi: \u00a0http:\/\/doi.org\/10.1002\/path.6242<\/a><\/em><\/span><\/li>\n
      2. Novel insight into the lipid network of plasma extracellular vesicles reveal sex-based differences in the lipidomic profile of alcohol use disorder patients<\/span><\/a>. C Perpi\u00f1\u00e1-Cl\u00e9rigues, S Mellado, C Galiana-Rosell\u00f3, M Fern\u00e1ndez-Regueras, M Marcos, F Garc\u00eda-Garc\u00eda* and M Pascual*.\u00a0Biology of Sex Differences<\/strong>\u00a02024 Jan 25<\/em>.\u00a0doi:\u00a0https:\/\/doi.org\/10.1186\/s13293-024-00584-5<\/a><\/em><\/span><\/li>\n
      3. The role of microRNAs to understand sex-based differences in Alzheimer\u2019s disease<\/a><\/span>. J Llera-Oyola, H Carceller, Z Andreu, MR Hidalgo, I Soler-S\u00e1ez, F Gordillo, B G\u00f3mez-Caba\u00f1es, B Roson, M de la Iglesia-Vay\u00e1, R Mancuso, FR Guerini, A Mizokami, F Garcia-Garcia*.\u00a0Biology of Sex Differences\u00a0<\/strong>2024\u00a0<\/strong>Jan 31.\u00a0doi:\u00a0<\/em>https:\/\/doi.org\/10.1186\/s13293-024-00588-1<\/a><\/span><\/li>\n
      4. The impact of sex on gene expression in the brain of schizophrenic patients: a systematic review and meta-analysis of transcriptomic studies<\/span><\/a>. H Carceller, MR Hidalgo, MJ Escarti, J Nacher, M Iglesia-Vaya, F Garcia-Garcia*.\u00a0Biology of Sex Differences<\/strong>\u00a02024 Jul 27. doi:\u00a0<\/em>10.1186\/s13293-024-00635-x<\/a><\/span><\/li>\n
      5. An integrated approach to identify sex-specific genes, transcription factors, and pathways in Alzheimer\u2019s disease.<\/span><\/a>\u00a0A L\u00f3pez-Cerd\u00e1n\u2020<\/sup>, Z Andreu\u2020<\/sup>, MR Hidalgo, I Soler-Sa\u00e9z, M de la Iglesia-Vay\u00e1, A Mizokami, FR Guerini, F Garc\u00eda-Garc\u00eda*<\/sup>.\u00a0Neurobiology of Disease\u00a0<\/strong>2024 Jul\u00a014. doi:\u00a0<\/em>10.1016\/j.nbd.2024.106605<\/a><\/span><\/li>\n
      6. Profile of plasma microRNAs as a potential biomarker of Wilson\u2019s disease.<\/span><\/a>\u00a0A S\u00e1nchez-Monteagudo, E Ripoll\u00e9s, O Murillo, S Dom\u00e8nech, M \u00c1lvarez-Sauco, E Girona, I Sastre-Bataller, A Bono, L Garc\u00eda-Villarreal, A Tugores, F Garc\u00eda-Garc\u00eda, G Gonz\u00e1lez-Aseguinolaza, M Berenguer, C Espin\u00f3s*.\u00a0Journal of Gastroenterology<\/strong>\u00a02024 Jul 26.\u00a0<\/em>doi<\/em>:<\/a>\u00a010.1007\/s00535-024-02135-6<\/a><\/span><\/li>\n
      7. Comparative profiling of whole-cell and exosome samples reveals protein signatures that stratify breast cancer subtypes<\/a>.<\/span> Z Andreu*, MR Hidalgo, E Masi\u00e1, S Romera-Giner, P Malmierca-Merlo, JA L\u00f3pez-Guerrero, F Garc\u00eda-Garc\u00eda*, MJ Vicent*.\u00a0Cellular and Molecular Life Sciences<\/strong>\u00a02024 Aug 22. doi:\u00a010.1007\/s00018-024-05403-z<\/a><\/em><\/span><\/li>\n
      8. MetaFun: Unveiling sex differences in multiple omics studies through comprehensive functional meta-analysis<\/span><\/a>. P Malmierca-Merlo, R Sanchez-Garcia, R Grillo-Risco, I Perez-Diez, JF Catal\u00e0-Senent, S Leon, H Gomez-Martinez, M de la Iglesia-Vaya, MR Hidalgo*, F Garcia-Garcia*.\u00a0Biology of Sex Differences\u00a0<\/strong>2024 Aug.\u00a0<\/strong><\/em>doi:\u00a0https:\/\/doi.org\/10.1186\/s13293-024-00640-0<\/a><\/em><\/span><\/li>\n
      9. HLA -A, -B, -C and -DRB1 association with Autism Spectrum Disorder risk: a sex-related analysis in Italian ASD children and their siblings<\/span><\/a>.<\/span> FR Guerini, E Bolognesi, MM Mensi, M Zanette, C Agliardi, M Zanzottera, M Chiappedi, S Annunziata, F Garcia-Garcia, A Cavallini, M Clerici.\u00a0Int. J. Mol. Sci.\u00a0<\/strong>2024,\u00a025(18), 9879; doi: https:\/\/doi.org\/10.3390\/ijms25189879\u00a0<\/em><\/span><\/li>\n
      10. Metagenomics Reveals Sex-Based Differences in Murine Fecal Microbiota Profiles Induced by Chronic Alcohol Consumption<\/span><\/a>. M Dom\u00ednguez-Pino, S Mellado, CM Cuesta, R Grillo-Risco, F Garc\u00eda-Garc\u00eda, M Pascual*. Int. J. Mol. Sci.<\/strong>\u00a02024, 25(23), 12534; https:\/\/doi.org\/10.3390\/ijms252312534<\/em><\/span><\/li>\n<\/ol>\n

        2023<\/span><\/strong><\/p>\n

          \n
        1. Lipidomic\u00a0Landscape of Circulating Extracellular Vesicles Isolated from Adolescents Exposed to Ethanol Intoxication: A Sex Difference Study<\/a><\/span>. C Perpi\u00f1\u00e1-Cl\u00e9rigues; S Mellado; JF Catal\u00e0-Senent; F Ib\u00e1\u00f1ez; P Costa; M Marcos; C Guerri; F Garc\u00eda-Garc\u00eda*; M Pascual*.\u00a0Biology of Sex Differences,\u00a0<\/i><\/em><\/strong>2023<\/i>\u00a0Apr 21;14(1):22.\u00a0<\/em>doi:\u00a0<\/em><\/strong>10.1186\/s13293-023-00502-1.<\/em><\/span><\/li>\n
        2. Deciphering the Sex Bias in Housekeeping Gene Expression in Adipose Tissue: a Comprehensive Meta-analysis of Transcriptomic Studies.<\/a><\/span>\u00a0M Guaita-Cespedes, R Grillo-Risco, MR Hidalgo, S Fern\u00e1ndez-Veledo, DJ Burks, M de la Iglesia-Vaya, A Galan*, F Garcia-Garcia*.\u00a0Biology of Sex Differences,\u00a0<\/i><\/strong>2023 Apr 18;14(1):20.<\/i><\/em>\u00a0doi<\/strong>: 10.1186\/s13293-023-00506-x.\u00a0<\/em><\/span><\/li>\n
        3. A Deep Transcriptome Meta-Analysis Reveals Sex Differences in Multiple Sclerosis<\/a><\/span>. JF Catal\u00e0-Senent, Z Andreu, MR Hidalgo, I Soler-S\u00e1ez, FJ Roig Molina, N Yanguas-Cas\u00e1s, A Neva-Alejo, A L\u00f3pez-Cerd\u00e1n, , M de la Iglesia-Vay\u00e1, BE Stranger, F Garc\u00eda-Garc\u00eda*.\u00a0Neurobiology of Disease<\/strong>, 2023 Apr 5; 181:106113,\u00a0doi:\u00a0<\/strong>https:\/\/doi.org\/10.1016\/j.nbd.2023.106113<\/em>.<\/span><\/li>\n
        4. SARS-CoV-2-encoded small RNAs are able to repress the host expression of SERINC5 to facilitate viral replication.<\/span><\/a>\u00a0E Esplugues, S Meseguer, MP Rubio, B Lainez, B P\u00e9rez-Benavente, R P\u00e9rez-Moraga, S Romera-Giner, F Garc\u00eda Garc\u00eda, O Martinez-Macias, A Cremades, FJ Iborra, F Almaz\u00e1n.\u00a0Frontiers Microbiology,<\/strong>\u00a02023 Feb<\/em>.\u00a0doi<\/strong>: 10.3389\/fmicb.2023.1066493<\/em>.<\/span><\/li>\n
        5. A comprehensive transcriptional signature in pancreatic ductal adenocarcinoma reveals new insights into the immune and desmoplastic microenvironment<\/span><\/a>. I Perez-Diez, Z Andreu, MR Hidalgo, C Perpi\u00f1\u00e1-Clerigues, L Fantin, A Fernandez-Serra, M Iglesia-Vaya, JA Lopez-Guerrero*, F Garcia-Garcia*.\u00a0Cancers<\/strong>\u00a02023, 15(11), 2887;\u00a0doi:<\/strong>\u00a0https:\/\/doi.org\/10.3390\/cancers15112887<\/em>.<\/span><\/li>\n
        6. Vascular differences between glioblastoma IDH-wildtype and astrocytoma IDH-mutant grade 4 at imaging and transcriptomic level<\/a>.<\/span> MM Alvarez-Torres, A Lopez-Cerdan, M de la Iglesia-Vaya, E Fuster-Garcia, F Garcia-Garcia, JM Garcia-Gomez.\u00a0NMR in Biomedicine<\/strong>, 2023 Jul 21<\/em>;\u00a0doi:<\/strong>\u00a0<\/em>https:\/\/doi.org\/10.1002\/nbm.5004<\/a><\/span><\/li>\n
        7. Rapid degeneration of iPSC-derived motor neurons lacking Gdap1 engages a mitochondrial-sustained innate immune response<\/a>.<\/span> J Torres; M Leon; J Prieto; MM Molina Navarro; F Garcia-Garcia; M Barneo-Mu\u00f1oz; X Ponsoda; R Saez; F Palau; J Dopazo; JC Izpisua Belmonte.\u00a0Cell Death Discovery<\/em><\/strong>,\u00a02023 Jul 1;9(1):217.\u00a0doi:<\/strong>\u00a010.1038\/s41420-023-01531-w.<\/em><\/span><\/li>\n
        8. Chemotherapy induces cell plasticity; controlling plasticity increases therapeutic response<\/span><\/a>. F Iborra, C Marti, V Calabuig-Navarro, P Papadopoulos, S Meseguer, P Iborra, F Garcia-Garc\u00eda, A Mart\u00ednez-Lorente, F Almazan, and J Calabuig.\u00a0Signal Transduction and Targeted Therapy<\/em><\/strong>, 2023 Jul 3;8(1):256.\u00a0doi<\/strong>: 10.1038\/s41392-023-01500-w.<\/em><\/span><\/li>\n
        9. Acclimation and Blood Sampling: Effects on Stress Markers in C57Bl\/6J Mice<\/a><\/span>. N Marin, A Moragon, D Gil, F Garcia-Garcia and V Bisbal. Animals<\/strong>\u00a02023, 13(18), 2816,\u00a0doi:<\/strong>\u00a0 https:\/\/doi.org\/10.3390\/ani13182816<\/em><\/span><\/li>\n
        10. Exploration of SUMO2\/3 Expression Levels and Autophagy Process in Fragile X-Associated Tremor\/Ataxia Syndrome: Addressing Study Limitations and Insights for Future Research<\/span><\/a>. MI Alvarez-Mora, G Garrabou, L Molina-Porcel, R Grillo-Risco, F Garcia-Garcia, T Barcos, J Cant\u00f3-Santos, L Rodriguez-Revenga.\u00a0Cells<\/strong>\u00a02023, 12(19), 2364;\u00a0doi:<\/strong>\u00a0 https:\/\/doi.org\/10.3390\/cells12192364<\/em><\/span><\/li>\n
        11. SAM-UNETR: Clinically Significant Prostate Cancer Segmentation using Transfer Learning from Large Model<\/span><\/a>. JA Alzate-Grisales, A Mora-Rubio, F Garc\u00eda-Garc\u00eda, R Tabares-Soto, M de la Iglesia-Vay\u00e1.\u00a0IEEE Access<\/strong>\u00a02023 Oct;\u00a0doi:\u00a0<\/strong>10.1109\/ACCESS.2023.3326882<\/a><\/em>.<\/span><\/li>\n
        12. SAMBA: Structure-Learning of Aquaculture Microbiomes Using a Bayesian Approach.<\/a><\/span>\u00a0Soriano B, Hafez AI, Naya-Catal\u00e0 F, Moroni F, Moldovan RA, Toxqui-Rodr\u00edguez S, Piazzon MC, Arnau V, Llorens C, P\u00e9rez-S\u00e1nchez J.\u00a0Genes<\/strong>\u00a02023 Aug 19;14(8):1650\u00a0doi:<\/strong>\u00a010.3390\/genes14081650<\/em><\/span><\/li>\n<\/ol>\n

          2022<\/strong><\/span><\/p>\n

            \n
          1. Overall survival and biomarker analysis of neoadjuvant nivolumab plus chemotherapy in operable stage IIIA non-small-cell lung cancer (NADIM phase II trial).<\/a>\u00a0M Provencio-Pulla, R Serna-Blasco, E Nadal, A Insa, MR Garc\u00eda-Campelo, J Casal Rubio, M D\u00f3mine, M Majem, D Rodr\u00edguez-Abreu, A Mart\u00ednez-Mart\u00ed, J de Castro Carpe\u00f1o, M Cobo, G L\u00f3pez Vivanco, E del Barco, R Bernab\u00e9 Caro, N Vi\u00f1olas, I Barneto Aranda, S Viteri, E Pereira, A Royuela, V Calvo, J Mart\u00edn-L\u00f3pez, F Garc\u00eda-Garc\u00eda, M Casarrubios, F Franco, E S\u00e1nchez-Herrero, B Massuti, A Cruz-Berm\u00fadez, A Romero.\u00a0Journal of Clinical Oncology<\/em><\/strong>, 2022 May 16<\/em>. https:\/\/ascopubs.org\/doi\/10.1200\/JCO.21.02660<\/li>\n
          2. Beyond the Brain: MIDS Extends BIDS to Multiple Modalities and Anatomical Regions<\/a>. JM Saborit-Torres, S Nadal-Almela, JA Montell-Serrano, E Oliver-Garcia, H Carceller, JA G\u00f3mez-\u00c1drian, M Caparr\u00f3s-Redondo, F Garc\u00eda-Garc\u00eda, J Domenech-Fern\u00e1ndez, M de la Iglesia-Vay\u00e1.\u00a0Stud Health Technol Inform<\/strong>. 2022 May 25;294:413-414.\u00a0doi<\/strong>: 10.3233\/SHTI220488.<\/em><\/li>\n
          3. Ptpn1 deletion protects oval cells against lipoapoptosis by favoring lipid droplet formation and dynamics<\/a>. I Barahona Sanz, P Rada, S Calero, R Grillo-Risco, L Pereira, MC Soler-Vazquez, L Mar\u00eda LaIglesia, MJ Moreno-Aliaga, L Herrero, D Serra, C Garc\u00eda\u2013Monz\u00f3n, A Gonzalez-Rodriguez, J Balsinde, F Garc\u00eda-Garc\u00eda, MP Valdecantos, A Valverde.\u00a0Cell Death and Differentiation<\/em><\/strong>, 2022 Jun 9. https:\/\/doi.org\/10.1038\/s41418-022-01023-x<\/em><\/li>\n
          4. NPC transplantation rescues SCI-driven cAMP\/EPAC2 alterations, leading to neuroprotection and microglial modulation<\/a>. B Mart\u00ednez-Rojas, E Giraldo, R Grillo-Risco, MR Hidalgo, E L\u00f3pez-Mocholi, A Alastrue-Agudo, F Garc\u00eda-Garc\u00eda, V Moreno-Manzano.\u00a0Cellular and Molecular Life Sciences<\/em><\/strong>\u00a02022 Jul 29;79(8):455.\u00a0doi<\/strong>: 10.1007\/s00018-022-04494-w.<\/em><\/li>\n
          5. Bioenergetic and autophagic characterization of skin fibroblasts from C9orf72 patients<\/a>. MI Alvarez-Mora, G Garrabaou, T Barcos, F Garcia-Garcia, R Grillo-Risco, E Peruga, L Gort, S Borrego-\u00c9cija, R Sanchez-Valle, J Canto-Santos, P Navarro-Navarro, L Rodriguez-Revenga.\u00a0Antioxidants<\/strong>. 2022 Jun 8.<\/em>\u00a0https:\/\/doi<\/strong>.org\/10.3390\/antiox11061129<\/em><\/li>\n
          6. Population-based sequencing of Mycobacterium tuberculosis reveals how current population dynamics are shaped by past epidemics<\/a>. I Cancino-Mu\u00f1oz, MG L\u00f3pez, M Torres-Puente, LM Villamayor, R Borr\u00e1s, M Borr\u00e1s-M\u00e1\u00f1ez, M Bosque, JJ Camarena, C Colijn, E Colomer-Roig, J Colomina, I Escribano, O Esparcia-Rodr\u00edguez, F Garc\u00eda-Garc\u00eda, A Gil-Brusola, C Gimeno, A Gimeno-Gasc\u00f3n, B Gomila-Sard, D Gonz\u00e1lez-Granda, N Gonzalo-Jim\u00e9nez, M Remedio Guna-Serrano, JL L\u00f3pez-Hontangas, C Mart\u00edn-Gonz\u00e1lez, R Moreno-Mu\u00f1oz, D Navarro, M Navarro, N Orta, E P\u00e9rez, J Prat, JC Rodr\u00edguez, M Montserrat Ruiz-Garc\u00eda, H Vanaclocha, Valencia Region Tuberculosis Working Group, I\u00f1aki Comas.\u00a0eLife<\/strong>\u00a02022 Jul 26;11:e76605.\u00a0doi<\/strong>: 10.7554\/eLife.76605<\/em>.<\/li>\n
          7. Minimal hepatic encephalopathy is associated to alterations in eye movements<\/a>. F Casanova-Ferrer, CE Garc\u00eda-Cena, JJ Gallego, A Fiorillo, A Urios, A Calvo-C\u00f3rdoba, MP Ballester, MP R\u00edos, L Durb\u00e1n, MR Hidalgo, F Garc\u00eda-Garc\u00eda, V Felipo & C Montoliu.\u00a0Sci Rep<\/strong>\u00a0. 2022 Oct 7;12(1):16837.\u00a0doi<\/strong>: 10.1038\/s41598-022-21230-3<\/em>.<\/li>\n
          8. Unveiling sex-based differences in Parkinson Disease: a comprehensive meta-analysis of transcriptomic studies<\/a>. A L\u00f3pez-Cerd\u00e1n, Z Andreu, MR Hidalgo, R Grillo-Risco, JF Catal\u00e0-Senent, I Soler-S\u00e1ez, A Neva-Alejo, F Gordillo, M de la Iglesia Vaya, F Garcia-Garcia*.\u00a0Biology of Sex Differences<\/strong>\u00a0<\/em>2022 Nov 22;13(1):68.\u00a0doi<\/em><\/strong>:\u00a010.1186\/s13293-022-00477-5<\/em>.<\/li>\n<\/ol>\n

            2021<\/strong><\/span><\/p>\n

              \n
            1. Hepatic Steatosis and Steatohepatitis: A Functional Meta-analysis of Sex-based Differences in Transcriptomic Studies<\/a>. Jos\u00e9 F. Catal\u00e0-Senent; Marta R. Hidalgo; Marina Berenguer; Gopanandan Parthasarathy; Harmeet Malhi; Pablo Malmierca-Merlo; Mar\u00eda de la Iglesia-Vay\u00e1; Francisco Garcia-Garcia*.\u00a0Biology of Sex Differences<\/em><\/strong>\u00a02021<\/em>, 12:29; https:\/\/doi.org\/10.1186\/s13293-021-00368-1.<\/li>\n
            2. Functional Signatures in Non-Small-Cell Lung Cancer: A Systematic Review and Meta-Analysis of Sex-Based Differences in Transcriptomic Studies<\/a>. I P\u00e9rez-D\u00edez, MR Hidalgo, P Malmierca-Merlo, Z Andreu, S Romera-Giner, R Farr\u00e0s, M de la Iglesia-Vay\u00e1, M Provencio, A Romero and F Garc\u00eda-Garc\u00eda*.\u00a0Cancers<\/strong>\u00a02021, 13(1), 143; https:\/\/doi.org\/10.3390\/cancers13010143.<\/em><\/li>\n
            3. Common<\/span> pathways and functional profiles reveal underlying patterns in Breast, Kidney and Lung cancers<\/a>. Sergio Romera-Giner, Zoraida Andreu Mart\u00ednez, Francisco Garc\u00eda-Garc\u00eda, Marta R Hidalgo*.\u00a0Biol Direct<\/strong>\u00a02021 May 26; 16(1):9, doi: 10.1186\/s13062-021-00293-8<\/em>.<\/li>\n
            4. CSVS, a crowdsourcing database of the Spanish population genetic variability.<\/a>\u00a0Pe\u00f1a-Chilet M, Rold\u00e1n G, Perez-Florido J, Ortu\u00f1o FM, Carmona R, Aquino V, Lopez-Lopez D, Loucera C, Fernandez-Rueda JL, Gallego A, Garc\u00eda-Garcia F, Gonz\u00e1lez-Neira A, Pita G, N\u00fa\u00f1ez-Torres R, Santoyo-L\u00f3pez J, Ayuso C, Minguez P, Avila-Fernandez A, Corton M, Moreno-Pelayo M\u00c1, Morin M, Gallego-Martinez A, Lopez-Escamez JA, Borrego S, Anti\u00f1olo G, Amigo J, Salgado-Garrido J, Pasalodos-Sanchez S, Morte B, Carracedo \u00c1, Alonso \u00c1, Dopazo J.\u00a0Nucleic Acids Res<\/strong>. 2020 Sep 29;. doi: 10.1093\/nar\/gkaa794. PubMed PMID: 32990755<\/em>.<\/li>\n
            5. Genomic Analysis of the First European Bacteriophages with Depolymerase Activity and Biocontrol Efficacy Against the Phytopathogen Ralstonia solanacearum<\/a>. EG Biosca, JF Catal\u00e0-Senent, A Fig\u00e0s-Segura, E Bertolini, MM L\u00f3pez, B \u00c1lvarez.\u00a0Viruses<\/strong>\u00a02021 Dec 17;13(12):2539.\u00a0<\/em>doi: 10.3390\/v13122539.<\/li>\n
            6. De novo Transcriptome Assembly and Comprehensive Annotation of Two Tree Tomato Cultivars (Solanum betaceum Cav.) with Different Fruit Color.<\/a>\u00a0Juan Pacheco, Santiago Vilanova, Rub\u00e9n Grillo-Risco, Francisco Garc\u00eda-Garc\u00eda, Jaime Prohens, Pietro Gramazio.\u00a0Horticulturae\u00a0<\/em><\/strong>2021,\u00a07(11), 31<\/em>.<\/li>\n
            7. TLR4 deficiency affects the microbiome and reduces intestinal dysfunctions and inflammation in chronic alcohol- fed mice.\u00a0<\/a>Carlos M. Cuesta, Mar\u00eda Pascual, Ra\u00fal P\u00e9rez-Moraga, Irene Rodr\u00edguez-Navarro, Francisco Garc\u00eda-Garc\u00eda, Juan R. Ure\u00f1a-Peralta, Consuelo Guerri.\u00a0Int J Mol Sci<\/strong>.\u00a02021 Nov 27;22(23).\u00a0doi: 10.3390\/ijms222312830. PMID: 34884634<\/em>.<\/li>\n
            8. Developmental disruption of Erbb4 in Pet1+ neurons impairs serotonergic sub-system connectivity and memory formation<\/a>. Candela Barettino, Alvaro Ballesteros-Gonz\u00e1lez, Andr\u00e9s Ayl\u00f3n, Xavier Soler, Leticia Ort\u00ed, Selene D\u00edaz, Isabel Reillo, Francisco Garc\u00eda Garc\u00eda, Francisco Jos\u00e9 Iborra, Cary Lai, Nathalie Dehorter, Xavier Leinekugel, Nuria Flames, Isabel Del Pino.\u00a0Front. Cell Dev. Biol.<\/strong>\u00a010 December 2021 | https:\/\/doi.org\/10.3389\/fcell.2021.770458<\/em>.<\/li>\n
            9. Genome-scale mechanistic modeling of signaling pathways made easy: A bioconductor\/cytoscape\/web server framework for the analysis of omic data<\/a>. Kinza Rian, Marta R. Hidalgo, Cankut \u00c7ubuk, Matias M. Falco, Carlos Loucera, Marina Esteban-Medina, Inmaculada Alamo-Alvarez, Mar\u00eda Pe\u00f1a-Chilet, Joaqu\u00edn Dopazo.\u00a0Computational and Structural Biotechnology Journal<\/strong>\u00a02021, 19: 2968-2978.<\/li>\n
            10. Mechanistic modeling of the SARS-CoV-2 disease map<\/a>. Rian K, Esteban-Medina M, Hidalgo MR, \u00c7ubuk C, Falco MM, Loucera C, Gunyel D, Ostaszewski M, Pe\u00f1a-Chilet M, Dopazo J.\u00a0BioData Min<\/strong>. 2021 Jan 21;14(1):5. doi: 10.1186\/s13040-021-00234-1. PMID: 33478554; PMCID: PMC7817765.<\/em><\/li>\n
            11. De-identifying Spanish medical texts \u2013 named entity recognition applied to radiology reports.<\/a>\u00a0I P\u00e9rez-D\u00edez, R P\u00e9rez-Moraga, A L\u00f3pez-Cerd\u00e1n, JM Salinas-Serrano & M de la Iglesia-Vay\u00e1.\u00a0Journal of Biomedical Semantics<\/strong>, volume 12, Article number: 6 (2021).<\/em><\/li>\n
            12. Transcriptomic Analysis of a Diabetic Skin-Humanized Mouse Model Dissects Molecular Pathways Underlying the Delayed Wound Healing Response<\/a>. C Le\u00f3n, F Garc\u00eda-Garc\u00eda, S Llames, E Garc\u00eda-P\u00e9rez, M Carretero, MC Arriba, J Dopazo, M del R\u00edo, MJ Esc\u00e1mez and L Mart\u00ednez-Santamar\u00eda.\u00a0Genes<\/strong>\u00a02021, 12(1), 47; https:\/\/doi.org\/10.3390\/genes12010047<\/em>.<\/li>\n<\/ol>\n

              2020<\/strong><\/span><\/p>\n

                \n
              1. Plasmatic Membrane Expression of Adhesion Molecules in Human Cardiac Progenitor\/Stem Cells Might Explain Their Superior Cell Engraftment after Cell Transplantation<\/a>. I Ontoria-Oviedo , I Palacios, J Panadero, B S\u00e1nchez, F Garc\u00eda-Garc\u00eda, A L\u00f3pez-Cerd\u00e1n, A Dorronsoro, D Castellano, L Rodr\u00edguez-Borlado, A Bernad, and P Sep\u00falveda.\u00a0Stem Cells International<\/strong>. 2020 Oct 10, https:\/\/doi.org\/10.1155\/2020\/8872009<\/em>.<\/li>\n
              2. Unveiling Sex-Based Differences in the Effects of Alcohol Abuse: A Comprehensive Functional Meta-Analysis of Transcriptomic Studies.<\/a>\u00a0Casanova Ferrer F, Pascual M, Hidalgo MR, Malmierca-Merlo P, Guerri C, Garc\u00eda-Garc\u00eda F*.\u00a0Genes<\/strong>\u00a0(Basel). 2020 Sep 21;11(9). doi: 10.3390\/genes11091106. PubMed PMID: 32967293<\/em>.<\/li>\n
              3. Community Assessment of the Predictability of Cancer Protein and Phosphoprotein Levels from Genomics and Transcriptomics.\u00a0<\/a>\u00a0Yang M, Petralia F, Li Z, Li H, Ma W, Song X, Kim S, Lee H, Yu H, Lee B, Bae S, Heo E, Kaczmarczyk J, St\u0119pniak P, Warcho\u0142 M, Yu T, Calinawan AP, Boutros PC, Payne SH, Reva B, Boja E, Rodriguez H, Stolovitzky G, Guan Y, Kang J, Wang P, Feny\u00f6 D, Saez-Rodriguez J.\u00a0Cell Syst<\/strong>. 2020 Aug 26;11(2):186-195.e9. doi: 10.1016\/j.cels.2020.06.013. PubMed PMID: 32710834.<\/em><\/li>\n
              4. \u00a0Lack of TLR4 modifies the miRNAs profile and attenuates inflammatory signaling pathways.<\/a>\u00a0Ure\u00f1a-Peralta JR, P\u00e9rez-Moraga R, Garc\u00eda-Garc\u00eda F, Guerri C.\u00a0PLoS One<\/strong>. 2020;15(8):e0237066. doi: 10.1371\/journal.pone.0237066. PubMed PMID: 32780740; PubMed Central PMCID: PMC7418977.<\/em><\/li>\n
              5. Exploring sunflower responses to Sclerotinia head rot at early stages of infection using RNA-seq analysis.\u00a0<\/a>Fass MI, Rivarola M, Ehrenbolger GF, Maringolo CA, Montecchia JF, Quiroz F, Garc\u00eda-Garc\u00eda F, Bl\u00e1zquez JD, Hopp HE, Heinz RA, Paniego NB, Lia VV.\u00a0Sci Rep<\/strong>.\u00a02020 Aug 7;10(1):13347.\u00a0doi: 10.1038\/s41598-020-70315-4.\u00a0PubMed PMID: 32770047; PubMed Central PMCID: PMC7414910.<\/em><\/li>\n
              6. \u00a0Sex is a strong prognostic factor in stage IV non-small-cell lung cancer patients and should be considered in survival rate estimation.<\/a>\u00a0Barqu\u00edn M, Calvo V, Garc\u00eda-Garc\u00eda F, Nu\u00f1ez B, S\u00e1nchez-Herrero E, Serna-Blasco R, Auglyt\u0117 M, Carcereny E, Rodriguez-Abreu D, L\u00f3pez Castro R, Guirado M, Camps C, Bosch-Barrera J, Massuti B, Ortega AL, Del Barco E, Gonzalez-Larriba JL, Aguiar D, Garc\u00eda-Campelo R, D\u00f3mine M, Agraso S, Sala MA, Oramas J, Bernab\u00e9 R, Blanco R, Parejo C, Cruz A, Menasalvas E, Royuela A, Romero A, Provencio M.\u00a0Cancer Epidemiol.<\/strong>\u00a02020 Aug;67:101737.\u00a0doi: 10.1016\/j.canep.2020.101737.\u00a0\u00a0PubMed PMID: 32450544.<\/em><\/li>\n
              7. \u00a0Uterine disorders affecting female fertility: what are the molecular functions altered in endometrium?.<\/a>\u00a0Devesa-Peiro A, Sebastian-Leon P, Garcia-Garcia F, Arnau V, Aleman A, Pellicer A, Diaz-Gimeno P.\u00a0Fertil Steril<\/strong>.\u00a02020 Jun;113(6):1261-1274.\u00a0doi: 10.1016\/j.fertnstert.2020.01.025.\u00a0PubMed PMID: 32482256.<\/em><\/li>\n
              8. \u00a0Rilpivirine attenuates liver fibrosis through selective STAT1-mediated apoptosis in hepatic stellate cells.\u00a0<\/a>Mart\u00ed-Rodrigo A, Alegre F, Moragrega \u00c1B, Garc\u00eda-Garc\u00eda F, Mart\u00ed-Rodrigo P, Fern\u00e1ndez-Iglesias A, Gracia-Sancho J, Apostolova N, Esplugues JV, Blas-Garc\u00eda A.\u00a0Gut<\/strong>. 2020 May;69(5):920-932. doi: 10.1136\/gutjnl-2019-318372. PubMed PMID: 31530714.<\/em><\/li>\n
              9. \u00a0Optimised molecular genetic diagnostics of Fanconi anaemia by whole exome sequencing and functional studies.\u00a0<\/a>Bogliolo M, Pujol R, Aza-Carmona M, Mu\u00f1oz-Subirana N, Rodriguez-Santiago B, Casado JA, Rio P, Bauser C, Reina-Castill\u00f3n J, Lopez-Sanchez M, Gonzalez-Quereda L, Gallano P, Catal\u00e1 A, Ruiz-Llobet A, Badell I, Diaz-Heredia C, Hladun R, Senent L, Argiles B, Bergua Burgues JM, Ba\u00f1ez F, Arrizabalaga B, L\u00f3pez Almaraz R, Lopez M, Figuera \u00c1, Molin\u00e9s A, P\u00e9rez de Soto I, Hernando I, Mu\u00f1oz JA, Del Rosario Marin M, Balma\u00f1a J, Stjepanovic N, Carrasco E, Cuesta I, Cosuelo JM, Regueiro A, Moraleda Jimenez J, Galera-Mi\u00f1arro AM, Rosi\u00f1ol L, Carri\u00f3 A, Bel\u00e9ndez-Bieler C, Escudero Soto A, Cela E, de la Mata G, Fern\u00e1ndez-Delgado R, Garcia-Pardos MC, S\u00e1ez-Villaverde R, Barraga\u00f1o M, Portugal R, Lendinez F, Hernadez I, Vagace JM, Tapia M, Nieto J, Garcia M, Gonzalez M, Vicho C, Galvez E, Valiente A, Antelo ML, Ancliff P, Garcia F, Dopazo J, Sevilla J, Paprotka T, P\u00e9rez-Jurado LA, Bueren J, Surralles J.\u00a0J Med Genet<\/strong>. 2020 Apr;57(4):258-268. doi: 10.1136\/jmedgenet-2019-106249. PubMed PMID: 31586946.<\/em><\/li>\n
              10. \u00a0Association of a single nucleotide polymorphism in the ubxn6 gene with long-term non-progression phenotype in HIV-positive individuals.<\/a>\u00a0D\u00edez-Fuertes F, De La Torre-Tarazona HE, Calonge E, Pernas M, Bermejo M, Garc\u00eda-P\u00e9rez J, \u00c1lvarez A, Capa L, Garc\u00eda-Garc\u00eda F, Saumoy M, Riera M, Boland-Auge A, L\u00f3pez-Gal\u00edndez C, Lathrop M, Dopazo J, Sakuntabhai A, Alcam\u00ed J.\u00a0Clin Microbiol Infect<\/strong>. 2020 Jan;26(1):107-114. doi: 10.1016\/j.cmi.2019.05.015. PubMed PMID: 31158522.<\/em><\/li>\n
              11. Transcriptomic Analysis Reveals a Differential Gene Expression Profile Between Two Sunflower Inbred Lines with Different Ability to Tolerate Water Stress<\/a>. M Escalante, A Vigliocco, Sebasti\u00e1n Moschen, P Fern\u00e1ndez, R Heinz, F Garcia-Garcia, J A Di Rienzo, A Andrade, S Alemano.\u00a0Plant Mol Biol Rep<\/strong>\u00a038, 222\u2013237 (2020). https:\/\/doi.org\/10.1007\/s11105-020-01192-4.<\/em><\/li>\n
              12. Mechanistic models of signaling pathways deconvolute the glioblastoma single-cell functional landscape<\/a>. MM Falco, M Pe\u00f1a-Chilet, C Loucera, MR Hidalgo, J Dopazo.\u00a0NAR Cancer,<\/strong>\u00a0Volume 2, Issue 2, June 2020, zcaa011, https:\/\/doi.org\/10.1093\/narcan\/zcaa011<\/em>.<\/li>\n<\/ol>\n

                2019<\/strong><\/span><\/p>\n

                  \n
                1. \u00a0Using mechanistic models for the clinical interpretation of complex genomic variation.<\/a>\u00a0Pe\u00f1a-Chilet M, Esteban-Medina M, Falco MM, Rian K, Hidalgo MR, Loucera C, Dopazo J.\u00a0Sci Rep<\/strong>.\u00a02019 Dec 12;9(1):18937.\u00a0doi: 10.1038\/s41598-019-55454-7.\u00a0PubMed PMID: 31831811; PubMed Central PMCID: PMC6908734.<\/em><\/li>\n
                2. Differences in gene expression profiling and biomarkers between histological colorectal carcinoma subsets from the serrated pathway.<\/a>\u00a0Garc\u00eda-Solano J, Turpin-Sevilla MDC, Garc\u00eda-Garc\u00eda F, Carbonell-Mu\u00f1oz R, Torres-Moreno D, Conesa A, Conesa-Zamora P.\u00a0Histopathology<\/strong>. 2019 Oct;75(4):496-507. doi: 10.1111\/his.13889. PubMed PMID: 31025430.<\/em><\/li>\n
                3. \u00a0A comparison of mechanistic signaling pathway activity analysis methods.\u00a0<\/a>Amadoz A, Hidalgo MR, \u00c7ubuk C, Carbonell-Caballero J, Dopazo J.\u00a0Brief Bioinform<\/strong>. 2019 Sep 27;20(5):1655-1668. doi: 10.1093\/bib\/bby040. Review. PubMed PMID: 29868818; PubMed Central PMCID: PMC6917216.<\/em><\/li>\n
                4. \u00a0Fibroblast activation and abnormal extracellular matrix remodelling as common hallmarks in three cancer-prone genodermatoses.<\/a>\u00a0Chac\u00f3n-Solano E, Le\u00f3n C, D\u00edaz F, Garc\u00eda-Garc\u00eda F, Garc\u00eda M, Esc\u00e1mez MJ, Guerrero-Aspizua S, Conti CJ, Menc\u00eda \u00c1, Mart\u00ednez-Santamar\u00eda L, Llames S, P\u00e9vida M, Carbonell-Caballero J, Puig-Butill\u00e9 JA, Maseda R, Puig S, de Lucas R, Baselga E, Larcher F, Dopazo J, Del R\u00edo M.\u00a0Br J Dermatol<\/strong>. 2019 Sep;181(3):512-522. doi: 10.1111\/bjd.17698. PubMed PMID: 30693469; PubMed Central PMCID: PMC6850467.<\/em><\/li>\n
                5. Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen.\u00a0<\/a>Menden MP, Wang D, Mason MJ, Szalai B, Bulusu KC, Guan Y, Yu T, Kang J, Jeon M, Wolfinger R, Nguyen T, Zaslavskiy M, Jang IS, Ghazoui Z, Ahsen ME, Vogel R, Neto EC, Norman T, Tang EKY, Garnett MJ, Veroli GYD, Fawell S, Stolovitzky G, Guinney J, Dry JR, Saez-Rodriguez J.\u00a0Nat Commun<\/strong>.\u00a02019 Jun 17;10(1):2674.\u00a0doi: 10.1038\/s41467-019-09799-2.\u00a0PubMed PMID: 31209238; PubMed Central PMCID: PMC6572829.<\/em><\/li>\n
                6. Characterization of molecular mechanisms underlying the axonal Charcot-Marie-Tooth neuropathy caused by MORC2 mutations.\u00a0<\/a>\u00a0Sancho P, Bartesaghi L, Miossec O, Garc\u00eda-Garc\u00eda F, Ram\u00edrez-Jim\u00e9nez L, Siddell A, \u00c5kesson E, Hedlund E, La\u0161\u0161uthov\u00e1 P, Pascual-Pascual SI, Sevilla T, Kennerson M, Lupo V, Chrast R, Espin\u00f3s C.\u00a0Hum Mol Genet<\/strong>. 2019 May 15;28(10):1629-1644. doi: 10.1093\/hmg\/ddz006. PubMed PMID: 30624633.<\/em><\/li>\n
                7. \u00a0Differential expression of circulating miRNAs as a novel tool to assess BAG3-associated familial dilated cardiomyopathy.<\/a>\u00a0Zaragoza C, Saura M, Hern\u00e1ndez I, Ramirez-Carracedo R, Garc\u00eda-Garc\u00eda F, Zamorano JL, Mangas A, Toro R.\u00a0Biosci Rep<\/strong>.\u00a02019 Mar 29;39(3). doi: 10.1042\/BSR20180934. Print 2019 Mar 29. PubMed PMID: 30792263; PubMed Central PMCID: PMC6418398.<\/em><\/li>\n
                8. Differential metabolic activity and discovery of therapeutic targets using summarized metabolic pathway models.\u00a0<\/a>\u00c7ubuk C, Hidalgo MR, Amadoz A, Rian K, Salavert F, Pujana MA, Mateo F, Herranz C, Carbonell-Caballero J, Dopazo J.\u00a0NPJ Syst Biol Appl<\/strong>. 2019;5:7. doi: 10.1038\/s41540-019-0087-2. PubMed PMID: 30854222; PubMed Central PMCID: PMC6397295.<\/em><\/li>\n<\/ol>\n

                  2018<\/strong><\/span><\/p>\n

                    \n
                  1. \u00a0Gene Expression Integration into Pathway Modules Reveals a Pan-Cancer Metabolic Landscape.<\/a>\u00a0Cubuk C, Hidalgo MR, Amadoz A, Pujana MA, Mateo F, Herranz C, Carbonell-Caballero J, Dopazo J.\u00a0Cancer Res.<\/strong>\u00a02018 Nov 1;78(21):6059-6072. doi: 10.1158\/0008-5472.CAN-17-2705. PubMed PMID: 30135189.<\/em><\/li>\n
                  2. Deep sequencing and miRNA profiles in alcohol-induced neuroinflammation and the TLR4 response in mice cerebral cortex.<\/a>\u00a0Ure\u00f1a-Peralta JR, Alfonso-Loeches S, Cuesta-Diaz CM, Garc\u00eda-Garc\u00eda F, Guerri C.\u00a0Sci Rep<\/strong>. 2018 Oct 29;8(1):15913. doi: 10.1038\/s41598-018-34277-y. PubMed PMID: 30374194; PubMed Central PMCID: PMC6206094.<\/em><\/li>\n
                  3. \u00a0Extracellular Vesicles Secreted by Hypoxic AC10 Cardiomyocytes Modulate Fibroblast Cell Motility.<\/a>\u00a0Ontoria-Oviedo I, Dorronsoro A, S\u00e1nchez R, Ciria M, G\u00f3mez-Ferrer M, Buigues M, Grueso E, Tejedor S, Garc\u00eda-Garc\u00eda F, Gonz\u00e1lez-King H, Garcia NA, Peir\u00f3-Molina E, Sep\u00falveda P.\u00a0Front Cardiovasc Med<\/strong>. 2018;5:152. doi: 10.3389\/fcvm.2018.00152. PubMed PMID: 30410918; PubMed Central PMCID: PMC6209632.<\/em><\/li>\n
                  4. A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection.\u00a0<\/a>\u00a0Fourati S, Talla A, Mahmoudian M, Burkhart JG, Kl\u00e9n R, Henao R, Yu T, Ayd\u0131n Z, Yeung KY, Ahsen ME, Almugbel R, Jahandideh S, Liang X, Nordling TEM, Shiga M, Stanescu A, Vogel R, Pandey G, Chiu C, McClain MT, Woods CW, Ginsburg GS, Elo LL, Tsalik EL, Mangravite LM, Sieberts SK.\u00a0Nat Commun<\/strong>. 2018 Oct 24;9(1):4418. doi: 10.1038\/s41467-018-06735-8. PubMed PMID: 30356117; PubMed Central PMCID: PMC6200745.<\/em><\/li>\n
                  5. \u00a0Models of cell signaling uncover molecular mechanisms of high-risk neuroblastoma and predict disease outcome.\u00a0<\/a>Hidalgo MR, Amadoz A, \u00c7ubuk C, Carbonell-Caballero J, Dopazo J.\u00a0Biol Direct<\/strong>. 2018 Aug 22;13(1):16. doi: 10.1186\/s13062-018-0219-4. PubMed PMID: 30134948; PubMed Central PMCID: PMC6106876.<\/em><\/li>\n
                  6. \u00a0The effects of death and post-mortem cold ischemia on human tissue transcriptomes.\u00a0<\/a>Ferreira PG, Mu\u00f1oz-Aguirre M, Reverter F, S\u00e1 Godinho CP, Sousa A, Amadoz A, Sodaei R, Hidalgo MR, Pervouchine D, Carbonell-Caballero J, Nurtdinov R, Breschi A, Amador R, Oliveira P, \u00c7ubuk C, Curado J, Aguet F, Oliveira C, Dopazo J, Sammeth M, Ardlie KG, Guig\u00f3 R.\u00a0Nat Commun<\/strong>. 2018 Feb 13;9(1):490. doi: 10.1038\/s41467-017-02772-x. PubMed PMID: 29440659; PubMed Central PMCID: PMC5811508.<\/em><\/li>\n
                  7. \u00a0Prognostic value of quantitative ctDNA levels in non small cell lung cancer patients.\u00a0<\/a>Provencio M, Torrente M, Calvo V, P\u00e9rez-Callejo D, Guti\u00e9rrez L, Franco F, P\u00e9rez-Barrios C, Barqu\u00edn M, Royuela A, Garc\u00eda-Garc\u00eda F, Bueno C, Garcia-Grande A, Camps C, Massuti B, Sotomayor E, Romero A.\u00a0Oncotarget<\/strong>. 2018 Jan 2;9(1):488-494. doi: 10.18632\/oncotarget.22470. PubMed PMID: 29416630; PubMed Central PMCID: PMC5787483.<\/em><\/li>\n<\/ol>\n\n\n
                    \n\n\n\n

                    All contributions in PubMed<\/a> <\/strong><\/p>\n","protected":false},"excerpt":{"rendered":"

                    2026 Monocarboxylate transporter 2 is required for the maintenance of myelin and axonal integrity by oligodendrocytes. L Izagirre-Urizar, L Mora-Huerta, I Soler-Saez, R Morales-Gallel, MJ Ulloa-Navas, JC Chara, S Calovi, C Deboux, L Merino-Cacho, C Netzahualcoyotzi, M Domercq, JL Zugaza, L Pellerin, F Garcia-Garcia, JM Garcia-Verdugo, C Matute, B Nait-Oumesmar, V Tepavcevic*. Nature Communications 2026.…
                    Leer m\u00e1s<\/a><\/p>\n","protected":false},"author":5,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/bioinfo.cipf.es\/cbl\/wp-json\/wp\/v2\/pages\/712"}],"collection":[{"href":"https:\/\/bioinfo.cipf.es\/cbl\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/bioinfo.cipf.es\/cbl\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/bioinfo.cipf.es\/cbl\/wp-json\/wp\/v2\/users\/5"}],"replies":[{"embeddable":true,"href":"https:\/\/bioinfo.cipf.es\/cbl\/wp-json\/wp\/v2\/comments?post=712"}],"version-history":[{"count":245,"href":"https:\/\/bioinfo.cipf.es\/cbl\/wp-json\/wp\/v2\/pages\/712\/revisions"}],"predecessor-version":[{"id":1868,"href":"https:\/\/bioinfo.cipf.es\/cbl\/wp-json\/wp\/v2\/pages\/712\/revisions\/1868"}],"wp:attachment":[{"href":"https:\/\/bioinfo.cipf.es\/cbl\/wp-json\/wp\/v2\/media?parent=712"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}