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espinos:results.coverage.analysis [2015/08/06 19:37] cespinos |
espinos:results.coverage.analysis [2015/08/12 11:05] (current) cespinos [2.2 Coverage Analysis - All exome coverage] |
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| Here, we show an overview of all exome coverage obtained after processing reads in each pipeline. Main statistical indicators included in each table: | Here, we show an overview of all exome coverage obtained after processing reads in each pipeline. Main statistical indicators included in each table: | ||
| - | * **Total_Cov_bases**: total sum of all base pairs coverage | + | * **Total_Cov_bases**: total sum of all base pairs coverage of each interval (exome capture kit target) |
| - | * **Mean_Cov, Median_Cov**: mean and median coverage by interval (exome capture kit target) | + | * **Mean_Cov, Median_Cov**: mean and median coverage of all intervals |
| - | * **%_bases_>15, >30, >40, >50**: percentage of base pairs covered by more than 15, 30, 40 or 50 reads | + | * **%_bases_>15, >30, >40, >50**: percentage of intervals base pairs covered by more than 15, 30, 40 or 50 reads |
| - | ===== BIER's pipeline ===== | + | ==== BIER's pipeline ==== |
| ^ Sample ^ Total_Cov_bases ^ Mean_Cov ^ Median_Cov ^ %_bases_>15 ^ %_bases_>30 ^ %_bases_>40 ^ %_bases_>50 ^ | ^ Sample ^ Total_Cov_bases ^ Mean_Cov ^ Median_Cov ^ %_bases_>15 ^ %_bases_>30 ^ %_bases_>40 ^ %_bases_>50 ^ | ||
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| | SGT274 | 1822284846 | 36.18 | 34 | 88.0 | 58.1 | 38.8 | 23.4 | | | SGT274 | 1822284846 | 36.18 | 34 | 88.0 | 58.1 | 38.8 | 23.4 | | ||
| - | ===== CNAG's pipeline ===== | + | ==== CNAG's pipeline ==== |
| ^ Sample ^ Total_Cov_bases ^ Mean_Cov ^ Median_Cov ^ %_bases_>15 ^ %_bases_>30 ^ %_bases_>40 ^ %_bases_>50 ^ | ^ Sample ^ Total_Cov_bases ^ Mean_Cov ^ Median_Cov ^ %_bases_>15 ^ %_bases_>30 ^ %_bases_>40 ^ %_bases_>50 ^ | ||
