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Analysis of Whole-Exome Sequencing Data for the Diagnosis of Peripheral Neuropathies

1. Methods

1.1 Pipeline's description

pipeline_scheme

1.2 Primary Analysis

  • Read counts from BAM files generated by both pipelines were obtained using FastQC in different quality control steps performed as well as using SAMtools.
  • For the variants comparison, VCF files were manipulated using bash scripting to:
    1. Count total number of variants in whole exome and neuropathy-related genes.
    2. Obtain a list of matching genomic positions in which variants had been founded by both pipelines.
  • Statistical metrics reports over variants were generated using VARIANT.

1.3 Coverage Analysis

2. Results

2.1 Primary Analysis

2.2 Coverage Analysis

espinos/exome_analysis.1439331056.txt.gz ยท Last modified: 2015/08/12 00:10 by cespinos
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