Citations on web-based tools

Citations on SNP web-based tools

Scholar Google citations over all the references of the following tools:

Tool nameCitesReferences
PolyPhen  1166  
Sift  942  
PupaSuite  262  
FoldX  230  
FastSNP  224  
PMUT  161  
SNPper  105  
SNAP  104  
SNPselector  82  
PhD-SNP  81  
Tamal  63  
parseSNP  61  
SNPinfo  56  
nsSNPAnalyzer  42  
Auto-Mute  42  
SNPnexus  25  
StSNP  18  
Variant Effect Predictor  15  
SNPLogic  14  
QuickSNP  13  
Mutation@A Glance  5  
MutaGeneSys  5  

Last update: 13-05-12 at 05:00











References:


PolyPhen  Cites
1.Ramensky, V., Bork, P. and Sunyaev, S. (2002) Human non-synonymous SNPs: server and survey. Nucleic Acids Res, 30, 3894-3900.1166

Sift  Cites
1.Ng, P.C. and Henikoff, S. (2003) SIFT: Predicting amino acid changes that affect protein function. Nucleic Acids Res, 31, 3812-3814.942

PupaSuite  Cites
1.Conde, L., Vaquerizas, J.M., Dopazo, H., Arbiza, L., Reumers, J., Rousseau, F., Schymkowitz, J. and Dopazo, J. (2006) PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes. Nucleic Acids Res, 34, W621-625.125
2.Conde, L., Vaquerizas, J.M., Ferrer-Costa, C., de la Cruz, X., Orozco, M. and Dopazo, J. (2005) PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposes. Nucleic Acids Res, 33, W501-505.53
3.Conde, L., Vaquerizas, J.M., Santoyo, J., Al-Shahrour, F., Ruiz-Llorente, S., Robledo, M. and Dopazo, J. (2004) PupaSNP Finder: a web tool for finding SNPs with putative effect at transcriptional level. Nucleic Acids Res, 32, W242-248.84

FoldX  Cites
1.Schymkowitz, J., Borg, J., Stricher, F., Nys, R., Rousseau, F. and Serrano, L. (2005) The FoldX web server: an online force field. Nucleic Acids Res, 33, W382-388.230

FastSNP  Cites
1.Yuan, H.Y., Chiou, J.J., Tseng, W.H., Liu, C.H., Liu, C.K., Lin, Y.J., Wang, H.H., Yao, A., Chen, Y.T. and Hsu, C.N. (2006) FASTSNP: an always up-to-date and extendable service for SNP function analysis and prioritization. Nucleic Acids Res, 34, W635-641.224

PMUT  Cites
1.Ferrer-Costa, C., Gelpi, J.L., Zamakola, L., Parraga, I., de la Cruz, X. and Orozco, M. (2005) PMUT: a web-based tool for the annotation of pathological mutations on proteins. Bioinformatics, 21, 3176-3178.161

SNPper  Cites
1.Riva, A. and Kohane, I.S. (2002) SNPper: retrieval and analysis of human SNPs. Bioinformatics, 18, 1681-1685.105

SNAP  Cites
1.Bromberg, Y. and Rost, B. (2007) SNAP: predict effect of non-synonymous polymorphisms on function104

SNPselector  Cites
1.Xu, H., Gregory, S.G., Hauser, E.R., Stenger, J.E., Pericak-Vance, M.A., Vance, J.M., Zuchner, S. and Hauser, M.A. (2005) SNPselector: a web tool for selecting SNPs for genetic association studies. Bioinformatics, 21, 4181-418682

PhD-SNP  Cites
1.Capriotti, E., Calabrese, R. and Casadio, R. (2006) Predicting the insurgence of human genetic diseases associated to single point protein mutations with support vector machines and evolutionary information. Bioinformatics, 22, 2729-2734.81

Tamal  Cites
1.Hemminger, B.M., Saelim, B. and Sullivan, P.F. (2006) TAMAL: an integrated approach to choosing SNPs for genetic studies of human complex traits. Bioinformatics, 22, 626-627.63

parseSNP  Cites
1.Taylor, N.E. and Greene, E.A. (2003) PARSESNP: A tool for the analysis of nucleotide polymorphisms. Nucleic Acids Res, 31, 3808-3811.61

SNPinfo  Cites
1.Xu Z, Taylor JA. (2009) SNPinfo: integrating GWAS and candidate gene information into functional SNP selection for genetic association studies56

nsSNPAnalyzer  Cites
1.Bao, L., Zhou, M. and Cui, Y. (2005) nsSNPAnalyzer: identifying disease-associated nonsynonymous single nucleotide polymorphisms. Nucleic Acids Res, 33, W480-482.42

Auto-Mute  Cites
1.Masso, M. and Vaisman, II. (2008) Accurate prediction of stability changes in protein mutants by combining machine learning with structure based computational mutagenesis. Bioinformatics, 24, 2002-2009.42

SNPnexus  Cites
1.Chelala, C., Khan, A. and Lemoine, N.R. (2009) SNPnexus: a web database for functional annotation of newly discovered and public domain single nucleotide polymorphisms.25

StSNP  Cites
1.Uzun, A., Leslin, C.M., Abyzov, A. and Ilyin, V. (2007) Structure SNP (StSNP): a web server for mapping and modeling nsSNPs on protein structures with linkage to metabolic pathways. Nucleic Acids Res, 35, W384-392.18

Variant Effect Predictor  Cites
1.McLaren, W., Pritchard, B., Rios, D., Chen, Y., Flicek, P. and Cunningham, F. (2010) Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor.15

SNPLogic  Cites
1.Pico, A.R., Smirnov, I.V., Chang, J.S., Yeh, R.F., Wiemels, J.L., Wiencke, J.K., Tihan, T.,Conklin, B.R. and Wrensch, M. (2009) SNPLogic: an interactive single nucleotide polymorphism selection, annotation, and prioritization system.14

QuickSNP  Cites
1.Grover, D., Woodfield, A.S., Verma, R., Zandi, P.P., Levinson, D.F. and Potash, J.B. (2007) QuickSNP: an automated web server for selection of tagSNPs. Nucleic Acids Res, 35, W115-120.13

Mutation@A Glance  Cites
1.Hijikata, A., Raju, R., Keerthikumar, S., Ramabadran, S., Balakrishnan, L., Ramadoss, S.K., Pandey, A., Mohan, S. and Ohara, O. (2010) Mutation@A Glance: an integrative web application for analysing mutations from human genetic diseases.5

MutaGeneSys  Cites
1.Stoyanovich, J. and Peer, I. (2008) MutaGeneSys: estimating individual disease susceptibility based on genome-wide SNP array data. Bioinformatics, 24, 440-4425