BioInfo bibliography

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2010
Dopazo J. "Functional profiling methods in cancer." In: Grützmann R, Pilarsky C, eds. Methods in molecular biology (Clifton, N.J.). Vol. 576.; 2010:. Methods Mol. Biol. 576. Abstract  Download: PDF (579.51 KB)
2009
Serra F, Arbiza L, Dopazo H. "Genómica Comparativa y Selección Natural. Aplicaciones en el Genoma Humano. Capítulo 1.6." In: Dopazo H, Navarro A, eds. Evolución y Adaptacón. 150 años después del Origen de las Especies. Valencia: Obrapropia. ; 2009:. Abstract
Marti-Renom MA, Capriotti E, Shindyalov I, Bourne P. "Structural Comparison and Alignment.". In: Structural Bioinformatics. 2nd ed. New Jersey. USA: Wiley-Blackwell; 2009.
Minguez P, Dopazo J. "Protein Interactions for Functional Genomics ." In: Li X-L, Ng S-K, eds. Biological Data Mining in Protein Interaction Networks. Hershey, USA: Idea Group Inc (IGI); 2009:. Download: PDF (216.1 KB)
2008
Dopazo J, Al-Shahrour F. "Expression and Microarrays.". In: Methods in Molecular Biology. Vol. 453. NJ,: Humana Press; 2008:. Download: PDF (2.52 MB)
Gabaldón T, Gil R, Peretó J, Latorre A, Moya A. "The core of a minimal gene set: insights from natural reduced genomes.". In: Protocells: Bridging nonliving and living matter. USA: The MIT Press; 2008:.
Gabaldón T. "Comparative genomics-based prediction of protein function.". In: Methods in Molecular Biology. Vol. 439. M. Starkey and R. Elaswarapu, Humana press ; 2008.
Dopazo H. "Selective Constraints on Human Disease Mutations and Polymorphisms.". In: Handbook of Human Molecular Evolution. UK: Hildegard Kehrer-Sawatzki & David N. Cooper. John Wiley & Sons, Ltd; 2008.
Capriotti E, Marti-Renom MA. "Assessment of protein structure predictions.". In: Computational Structural Biology. New Jersey, USA: World Scientific Publishing Company; 2008.
Dopazo H. "Selective Constraints and Human Disease Genes: Evolutionary and Bioinformatic Approaches.". In: Encyclopedia of Life Science. UK: John Wiley & Sons, Ltd.; 2008. Download: PDF (389.71 KB)
2007
Gabaldón T, Huynen MA. "Reconstruction of ancestral proteomes.". In: Ancestral Sequence Reconstruction. Oxford: D. Liberles; 2007.
Dopazo J. "Clustering - Class discovery in the post-genomic era.". In: Fundamentals of data mining in genomics and proteomics. New York, USA: Springer-Verlag, W. Dubitzky, M. Granzow and D.P. Berrar ; 2007. Download: PDF (267.98 KB)
Montaner D, Al-Shahrour F, Dopazo J. "New Trends in the Analysis of Functional Genomic Data.". In: Progress in Industrial Mathematics at ECMI 2006. Vol. 12. Berlin : Springer ; 2007:. Download: PDF (51.32 KB)
Dopazo J, Al-Shahrour F. "Functional annotation of microarray experiments.". In: Microarray Technology Through Applications. New York, USA: Taylor & Francis, F. Falciani; 2007.
Conesa A, Forment J, Gadea J, van Dijk J. "Microarray Technology in Agricultural Research.". In: Microarray Technology Through Applications. F. Falciani. Publisher: Taylor and Francis Group; 2007:.
Robledo M, González-Neira A, Dopazo J. "f single nucleotide polymorphism arrays: Design, tools and applications.". In: Microarray Technology Through Applications. New York, USA: Taylor & Francis, F. Falciani ; 2007.
2006
Dopazo H. "La clasificación de los organismos.". In: Invitación a la Biología. Buenos Aires: Curtis, Barnes, Schnek & Flores. 2da, Editorial Medica Panamericana; 2006.
Huynen MA, Snel B, T G. "Reliable and specific protein function prediction by combining homology with genomic(s) context.". In: Discovery of biomolecular mechanisms with theoretical data analyses. F. Eisenhaber, Landes Bioscience; 2006.
2005
Al-Shahrour F, Dopazo J. "Ontologies and functional genomics.". In: Data analysis and visualisation in genomics and proteomics. Wiley, F. Azuaje and J. Dopazo; 2005:. Download: PDF (148.68 KB)
Antón J, Peña A, Valens M, et al. "Salinibacter ruber: genomics and biogeography.". In: Adaptation to life in high salt concentrations in Archaea, Bacteria and Eukarya. Vol. 9. Dordrecht, Netherlands: Nina Gunde-Cimerman, Ana Plemenitas, and Aharon Oren. Kluwer Academic Publishers; 2005:. Download: PDF (381.08 KB)
Azuaje F, Dopazo J. "Data analysis and visualisation in genomics and proteomics." Wiley, F. Azuaje and J. Dopazo; 2005. Download: PDF (27.92 KB)
Azuaje F, Al-Shahrour F, Dopazo J. "Ontology-driven approaches to analyzing data in functional genomics.". In: Bioinformatics and Drug Discovery. Totowa, NJ: The Humana Press Inc., R. Larson; 2005:. Download: PDF (4.2 MB)
Azuaje F, Dopazo J. "Integrative Data Analysis and Visualization: Introduction to Critical Problems, Goals and Challenges.". In: Data analysis and visualisation in genomics and proteomics. Wiley, F. Azuaje and J. Dopazo; 2005:. Download: PDF (27.92 KB)
Azuaje F, Dopazo J, Wang H. "Data and Predictive Model Integration: an Overview of Key Concepts, Problems and Solutions.". In: Data analysis and visualisation in genomics and proteomics. Wiley, F. Azuaje and J. Dopazo; 2005. Download: PDF (45.15 KB)
2004
Wang H, Azuaje F, Bodenreider O, Dopazo J. "Gene expression Correlation and Gene Ontology-Based Similarity: An Assessment of Quantitative Relationship.". In: IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology.; 2004:. Download: PDF (186.39 KB)