BioInfo bibliography

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2008
Reumers J, Conde L, Medina I, et al. "Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases." Nucleic Acids Res. 2008;36:D825-9. Abstract  Download: PDF (1.83 MB)
2007
Conde L, Montaner D, Burguet-Castell J, Tarraga J, Al-Shahrour F, Dopazo J. "Functional profiling and gene expression analysis of chromosomal copy number alterations." Bioinformation. 2007;1:432-5. Abstract
Conde L, Montaner D, Burguet-Castell J, et al. "ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling." Nucleic Acids Res. 2007;35:W81-5. Abstract
2006
Al-Shahrour F, Minguez P, Tarraga J, et al. "BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments." Nucleic Acids Res. 2006;34:W472-6. Abstract
Montaner D, Tarraga J, Huerta-Cepas J, et al. "Next station in microarray data analysis: GEPAS." Nucleic Acids Res. 2006;34:W486-91. Abstract
Conde L, Vaquerizas JM, Dopazo H, et al. "PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes." Nucleic Acids Res. 2006;34:W621-5. Abstract  Download: PDF (255.63 KB)
2005
Al-Shahrour F, Minguez P, Vaquerizas JM, Conde L, Dopazo J. "BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments." Nucleic Acids Res. 2005;33:W460-4. Abstract
Vaquerizas JM, Conde L, Yankilevich P, et al. "GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data." Nucleic Acids Res. 2005;33:W616-20. Abstract
Conde L, Vaquerizas JM, Ferrer-Costa C, de la Cruz X, Orozco M, Dopazo J. "PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposes." Nucleic Acids Res. 2005;33:W501-5. Abstract
2004
Herrero J, Vaquerizas JM, Al-Shahrour F, et al. "New challenges in gene expression data analysis and the extended GEPAS." Nucleic Acids Res. 2004;32:W485-91. Abstract
Conde L, Vaquerizas JM, Santoyo J, et al. "PupaSNP Finder: a web tool for finding SNPs with putative effect at transcriptional level." Nucleic Acids Res. 2004;32:W242-8. Abstract
2002
Conde L, Mateos A, Herrero J, Dopazo J. "Unsupervised reduction of the dimensionality followed by supervised learning with a perceptron improves the classification of conditions in DNA microarray gene expression data.". In: Neural Networks for Signal Processing XII. New York, USA: IEEE Press, Boulard, Adali, Bengio, Larsen, Douglas; 2002:. Download: PDF (89.4 KB)