BioInfo bibliography

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2009
Dopazo H. "Bioinformática, Genómica y Evolución. Una alianza estratégica para la biología de este siglo." Ciencia Hoy. 2009;19:88-93.
Evolución y Adaptación.150 años después del Origen de las Especies. Dopazo H, Navarro A, eds. Valencia. España: Obrapropia. ; 2009. Abstract
Serra F, Arbiza L, Dopazo H. "Genómica Comparativa y Selección Natural. Aplicaciones en el Genoma Humano. Capítulo 1.6." In: Dopazo H, Navarro A, eds. Evolución y Adaptacón. 150 años después del Origen de las Especies. Valencia: Obrapropia. ; 2009:. Abstract
Reiss JO, Burke AC, Archer C, et al. "Pere Alberch: Originator of EvoDevo." Biological Theory. 2009;3: 351-353.
Martin-Coello J, Dopazo H, Arbiza L, Ausio J, Roldan ER, Gomendio M. "Sexual selection drives weak positive selection in protamine genes and high promoter divergence, enhancing sperm competitiveness." Proc Biol Sci. 2009. Abstract  Download: PDF (285.39 KB)
2008
Dopazo H. "Selective Constraints and Human Disease Genes: Evolutionary and Bioinformatic Approaches.". In: Encyclopedia of Life Science. UK: John Wiley & Sons, Ltd.; 2008. Download: PDF (389.71 KB)
Dopazo H. "Selective Constraints on Human Disease Mutations and Polymorphisms.". In: Handbook of Human Molecular Evolution. UK: Hildegard Kehrer-Sawatzki & David N. Cooper. John Wiley & Sons, Ltd; 2008.
Capriotti E, Arbiza L, Casadio R, Dopazo J, Dopazo H, Marti-Renom MA. "Use of estimated evolutionary strength at the codon level improves the prediction of disease-related protein mutations in humans." Hum Mutat. 2008;29:198-204. Abstract
2007
Al-Shahrour F, Arbiza L, Dopazo H, et al. "From genes to functional classes in the study of biological systems." BMC Bioinformatics. 2007;8:114. Abstract
Huerta-Cepas J, Dopazo H, Dopazo J, Gabaldon T. "The human phylome." Genome Biol. 2007;8:R109. Abstract
Rico D, Vaquerizas JM, Dopazo H, Bosca L. "Identification of conserved domains in the promoter regions of nitric oxide synthase 2: implications for the species-specific transcription and evolutionary differences." BMC Genomics. 2007;8:271. Abstract
Tarraga J, Medina I, Arbiza L, et al. "Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics." Nucleic Acids Res. 2007;35:W38-42. Abstract
2006
Dopazo H. "La clasificación de los organismos.". In: Invitación a la Biología. Buenos Aires: Curtis, Barnes, Schnek & Flores. 2da, Editorial Medica Panamericana; 2006.
Conde L, Vaquerizas JM, Dopazo H, et al. "PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes." Nucleic Acids Res. 2006;34:W621-5. Abstract  Download: PDF (255.63 KB)
Arbiza L, Dopazo J, Dopazo H. "Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome." PLoS Comput Biol. 2006;2:e38. Abstract
Arbiza L, Duchi S, Montaner D, et al. "Selective pressures at a codon-level predict deleterious mutations in human disease genes." J Mol Biol. 2006;358:1390-404. Abstract
2005
Dopazo H, Dopazo J. "Genome-scale evidence of the nematode-arthropod clade." Genome Biol. 2005;6:R41. Abstract
2004
Dopazo H, Santoyo J, Dopazo J. "Phylogenomics and the number of characters required for obtaining an accurate phylogeny of eukaryote model species." Bioinformatics. 2004;20 Suppl 1:i116-21. Abstract  Download: PDF (128.44 KB)
2003
Dopazo H, Gordon MB, Perazzo R, Risau-Gusman S. "A model for the emergence of adaptive subsystems." Bull Math Biol. 2003;65:27-56. Abstract
2001
Dopazo H, Gordon MB, Perazzo R, Risau-Gusman S. "A model for the interaction of learning and evolution." Bull Math Biol. 2001;63:117-34. Abstract