BioInfo bibliography
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"FM19G11, a new hypoxia-inducible factor (HIF) modulator, affects stem cell differentiation status." J. Biol. Chem.. 2010;285(2):1333-42. Abstract
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"Hypoxia Promotes Efficient Differentiation of Human Embryonic Stem Cells to Functional Endothelium." Stem cells (Dayton, Ohio). 2010. Abstract
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"ETE: a python Environment for Tree Exploration." BMC bioinformatics. 2010;11(1):24. Abstract
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"SIMAP--a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters." Nucleic Acids Res.. 2010;38(Database issue):D223-6. Abstract
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"Functional genomics and networks: new approaches in the extraction of complex gene modules." Expert Rev Proteomics. 2010;7(1):55-63. Abstract
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"Changes in the pattern of DNA methylation associate with twin discordance in systemic lupus erythematosus." Genome Res.. 2010;20(2):170-9. Abstract
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"Functional profiling methods in cancer." In: Grützmann R, Pilarsky C, eds. Methods in molecular biology (Clifton, N.J.). Vol. 576.; 2010:. Methods Mol. Biol. 576. Abstract
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"Statistical methods for analysis of high-throughput RNA interference screens." Nature Methods. 2009;6(8):569-575. Download: PDF (394.5 KB)
"Functional signatures identified in B-cell non-Hodgkin lymphoma profiles." Leuk. Lymphoma. 2009;50(10):1699-708. Abstract
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"Structural Comparison and Alignment.". In: Structural Bioinformatics. 2nd ed. New Jersey. USA: Wiley-Blackwell; 2009.
"A kernel for the Tropical Disease Initiative." Nat Biotechnol. 2009;27:320-1. Download: PDF (935.08 KB)
"Exploring the antimicrobial action of a carbon monoxide-releasing compound through whole-genome transcription profiling of Escherichia coli." Microbiology. 2009;155:813-24. Abstract
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"Sexual selection drives weak positive selection in protamine genes and high promoter divergence, enhancing sperm competitiveness." Proc Biol Sci. 2009. Abstract
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"Analysis of chronic lymphotic leukemia transcriptomic profile: differences between molecular subgroups." Leuk Lymphoma. 2009;50:68-79. Abstract
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"ModLink+: Improving fold recognition by using protein-protein interactions." Bioinformatics. 2009. Abstract
"Formulating and testing hypotheses in functional genomics." Artif Intell Med. 2009;45:97-107. Abstract
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"Membrane transporters and carbon metabolism implicated in chloride homeostasis differentiate salt stress responses in tolerant and sensitive Citrus rootstocks." Funct Integr Genomics. 2009. Abstract
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"Gene set internal coherence in the context of functional profiling." BMC Genomics. 2009;10:197.
"SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks." Nucl. Acids Res.. 2009;37:W109-114. Abstract
"Protein Interactions for Functional Genomics ." In: Li X-L, Ng S-K, eds. Biological Data Mining in Protein Interaction Networks. Hershey, USA: Idea Group Inc (IGI); 2009:. Download: PDF (216.1 KB)
"SARA: a server for function annotation of RNA structures." Nucl. Acids Res.. 2009:gkp433. Abstract
"Functional assessment of time course microarray data." BMC Bioinformatics. 2009;10 Suppl 6:S9.
"Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies." Nucl. Acids Res.. 2009;37:W340-344. Abstract
