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downloads [2015/05/29 13:32] sotacam [Simulation algorithm] |
downloads [2015/06/03 15:19] (current) sotacam |
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===== Simulation algorithm ===== | ===== Simulation algorithm ===== | ||
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+ | R scripts for simulating RNA-seq count data for two experimental conditions: | ||
{{:simulation_high.r|Simulation of HIGH variability scenarios}} | {{:simulation_high.r|Simulation of HIGH variability scenarios}} | ||
{{:simulation_low.r|Simulation of LOW variability scenarios}} | {{:simulation_low.r|Simulation of LOW variability scenarios}} | ||
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+ | ===== Differential expression on simulated data ===== | ||
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+ | These scripts show how the differential expression methods were applied on simulated data sets: | ||
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+ | {{:methodsonsimulations.r|DE methods on simulations}} | ||
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+ | {{:globalsimulationsanalysis.r|Analysis of DE results}} | ||
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+ | ===== Analysis on experimental data ===== | ||
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+ | R script used for generating exploratory figures, differential expression and functional enrichment analysis on experimental datasets (F.oxysporum and Prostate Cancer): | ||
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+ | {{:resultsexperimentaldata.r|Experimental Data Analysis}} |