Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
rma [2010/09/29 15:37]
mbleda
rma [2010/09/29 15:38] (current)
mbleda
Line 3: Line 3:
 **RMA** ([[http://​biostatistics.oxfordjournals.org/​cgi/​content/​abstract/​4/​2/​249|"​Robust Multi-Array"​]]) background correction is followed by a [[http://​bioinformatics.oxfordjournals.org/​cgi/​content/​abstract/​19/​2/​185|"​quantile"​]] scale transformation to get similar intensity distribution across arrays. **RMA** ([[http://​biostatistics.oxfordjournals.org/​cgi/​content/​abstract/​4/​2/​249|"​Robust Multi-Array"​]]) background correction is followed by a [[http://​bioinformatics.oxfordjournals.org/​cgi/​content/​abstract/​19/​2/​185|"​quantile"​]] scale transformation to get similar intensity distribution across arrays.
  
-Only Perfect Match (**PM**) probes are used in the computation Missmatch (**MM**) ​**probes are discarded**) and [[http://​en.wikipedia.org/​wiki/​Median_polish|"​median polish"​]] is used to summarize probe-sets into a unique intensity measuremen. RMA returns normalized data in **log2** scale, as in the original RMA implementation.+Only Perfect Match (**PM**) probes are used in the computation Missmatch (**MM**) probes are discarded and [[http://​en.wikipedia.org/​wiki/​Median_polish|"​median polish"​]] is used to summarize probe-sets into a unique intensity measuremen. RMA returns normalized data in **log2** scale, as in the original RMA implementation.
rma.txt ยท Last modified: 2010/09/29 15:38 by mbleda
Driven by DokuWiki Recent changes RSS feed Valid XHTML 1.0 do yourself a favour and use a real browser - get firefox!!