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raw_data_viewer [2008/02/18 09:20]
dmontaner
raw_data_viewer [2010/05/10 19:39] (current)
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 ====== Raw Data Viewer ====== ​ ====== Raw Data Viewer ====== ​
  
-This module of [[GEPAS]] is intended for the **visualization of raw data**. It is a tool complementary to the [[Normalization|Normalization]] module of [[GEPAS]]. Both tools work over the same [[raw data]] and have a similar [[normalization#​data_input|input requirements]].+This module of [[Babelomics]] is intended for the **visualization of raw data**. It is a tool complementary to the [[Normalization|Normalization]] module of [[Babelomics]]. Both tools work over the same [[raw data]] and have a similar [[normalization#​data_input|input requirements]].
  
 Select the [[Affymetrix]] or the [[twocolor|TwoColors]] button in the form in order to indicate which platform you are analyzing. If you are normalizing a two color platform then you also need to indicate the **Array type** you are using. Selected plots will be displayed in png format. Select the [[Affymetrix]] or the [[twocolor|TwoColors]] button in the form in order to indicate which platform you are analyzing. If you are normalizing a two color platform then you also need to indicate the **Array type** you are using. Selected plots will be displayed in png format.
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   * **RNA digestion**:​ a line is displayed for each array aiming to detect possible RNA degradation. Within each probe-set, probes are numbered directionally from the 5' end to the 3' end. Within each array, probe intensities are averaged by probe number, across all genes in the array. These means are represented with a line for each chip.   * **RNA digestion**:​ a line is displayed for each array aiming to detect possible RNA degradation. Within each probe-set, probes are numbered directionally from the 5' end to the 3' end. Within each array, probe intensities are averaged by probe number, across all genes in the array. These means are represented with a line for each chip.
  
-  * **MA plot**: displays [[maplot|MA-plots] of each of the arrays against a pseudo-median reference computed across all arrays in the raw data.+  * **MA plot**: displays [[maplot|MA-plots]] of each of the arrays against a pseudo-median reference computed across all arrays in the raw data.
  
   * **Raw image**: represents the raw data mimicking scanner image.   * **Raw image**: represents the raw data mimicking scanner image.
raw_data_viewer.txt ยท Last modified: 2010/05/10 19:39 (external edit)
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