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input_file_formats [2012/04/18 16:43]
mbleda [Annotation file]
input_file_formats [2012/04/18 16:44] (current)
mbleda [Annotation file]
Line 54: Line 54:
 RENATO offers the possibility to use your own regulatory annotations instead of the ones provided (TFBSs and miRNA targets). The input format for regulatory annotations consists of a two-column file delimited by tab. The first column must indicate the target gene and the second column the regulator. Example: RENATO offers the possibility to use your own regulatory annotations instead of the ones provided (TFBSs and miRNA targets). The input format for regulatory annotations consists of a two-column file delimited by tab. The first column must indicate the target gene and the second column the regulator. Example:
  
- BRCA2 hsa-miR-146a-3p +<​file>​BRCA2 hsa-miR-146a-3p 
- CADM1 hsa-miR-192-3p +CADM1 hsa-miR-192-3p 
- CD59 hsa-miR-124-3p +CD59 hsa-miR-124-3p 
- EMP1 hsa-miR-34a-3p +EMP1 hsa-miR-34a-3p 
- FBXO28 hsa-miR-145-3p +FBXO28 hsa-miR-145-3p 
- FOS hsa-miR-101-5p +FOS hsa-miR-101-5p 
- GAB1 hsa-miR-17-5p +GAB1 hsa-miR-17-5p 
- GATA6 hsa-miR-181c-3p +GATA6 hsa-miR-181c-3p 
- KLK1 hsa-miR-224-3p +KLK1 hsa-miR-224-3p 
- PHKB hsa-miR-15a-5p +PHKB hsa-miR-15a-5p 
- PTEN hsa-miR-217+PTEN hsa-miR-217</​file>​
  
  
input_file_formats.txt · Last modified: 2012/04/18 16:44 by mbleda
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